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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0592300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1637 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.52 (0.0557) R2 : 0.563
β1 : -1.13 (0.204) R2dD : 0.0309 R2D : -0.000264
β2 : 1.99 (0.138) R2dC : 0.202 R2C : 0.155
β3 : -3.1 (0.192) R2dE : 0.255 R2E : 0.226
β4 : 3.4 (0.566) R2dD*C : 0.0347 R2D*C : 0.00196
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.887 (0.119) R2dN8 : 0.072 R2N8 : 0.068
σ : 1.04
deviance : 495.98
__
_____
C
peak time of C : 20.9
E
wheather : radiation
threshold : 0.17
memory length : 94
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.93
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
495.8 1.05 6.52 -1.08 2.04 -3.17 3.4 0.656 -0.878 20.9 0.17 94 7.02 --
495.98 1.04 6.52 -1.13 1.99 -3.1 3.4 -- -0.887 20.9 0.17 94 6.93 --
534.26 1.08 6.52 -1.2 2.05 -3.16 -- 0.593 -0.873 20.7 0.1754 94 7.04 --
534.57 1.08 6.52 -1.24 2.03 -3.12 -- -- -0.886 20.7 0.1718 94 7 --
677.02 1.21 6.46 -0.806 -- -3.49 -- 2.68 -0.573 -- 0.24 90 5.7 --
754.33 1.29 6.57 -1.34 1.89 -- 2.92 -- -1.15 22.2 -- -- -- --
788.12 1.31 6.57 -1.46 1.88 -- -- -- -1.16 22.1 -- -- -- --
659.42 1.2 6.42 -1.28 -- -3.37 -- -- -0.643 -- 0.25 93 5.52 --
575.53 1.12 6.52 -- 2.05 -3.19 -- -- -0.799 20.6 0.1884 97 7.07 --
1001.31 1.48 6.52 -1.43 -- -- -- -- -1.15 -- -- -- -- --
844.09 1.36 6.54 -- 1.87 -- -- -- -0.994 22.1 -- -- -- --
697.54 1.23 6.41 -- -- -3.48 -- -- -0.669 -- 0.19 94 5.39 --
1055.38 1.52 6.49 -- -- -- -- -- -0.994 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 521.48 radiation 1.0 90 < th dose dependent sin 13 NA
2 531.49 radiation 1.0 90 > th dose independent sin 13 NA
6 542.23 radiation 1.0 90 < th dose independent sin 13 NA
7 542.27 temperature 10.0 30 > th dose dependent rect. 5 14
8 542.52 temperature 30.0 720 < th dose independent rect. 17 3
9 546.51 radiation 1.0 90 > th dose independent rect. 16 15
11 553.50 temperature 25.0 1440 > th dose dependent rect. 16 3
34 561.69 temperature 25.0 1440 > th dose dependent rect. 11 9
35 561.73 radiation 10.0 270 < th dose dependent rect. 16 11
41 562.46 temperature 30.0 720 < th dose independent rect. 17 10
53 563.58 temperature 25.0 1440 > th dose dependent rect. 5 15
57 563.83 radiation 1.0 270 < th dose dependent rect. 5 22
74 564.62 temperature 30.0 720 < th dose independent rect. 17 12
83 565.05 temperature 25.0 1440 > th dose dependent sin 20 NA
142 568.27 temperature 25.0 1440 > th dose dependent rect. 11 22
186 570.21 temperature 25.0 1440 > th dose dependent rect. 14 19
187 570.24 radiation 1.0 270 > th dose independent rect. 13 17
228 571.35 temperature 25.0 1440 > th dose dependent no NA NA
237 571.67 temperature 25.0 1440 > th dose dependent rect. 14 23
265 572.72 radiation 1.0 30 < th dose dependent rect. 19 11
275 572.87 radiation 1.0 30 < th dose dependent rect. 19 19
293 573.42 temperature 20.0 30 > th dose independent rect. 5 14
301 573.86 radiation 1.0 270 < th dose independent rect. 16 11
303 574.10 radiation 1.0 270 < th dose independent rect. 5 22
304 574.13 humidity 60.0 720 > th dose independent rect. 17 3
306 574.31 radiation 40.0 10 < th dose dependent rect. 5 14
323 575.13 radiation 1.0 30 < th dose dependent rect. 19 17
343 575.96 radiation 1.0 270 < th dose independent rect. 8 19
362 577.36 humidity 60.0 720 > th dose independent rect. 17 10
377 578.02 temperature 25.0 1440 > th dose dependent rect. 12 1
382 578.28 wind 3.0 43200 > th dose dependent rect. 11 3
383 578.40 radiation 1.0 30 < th dose independent rect. 19 11
392 578.95 wind 5.0 43200 > th dose dependent rect. 10 6
410 580.06 precipitation 0.1 30 < th dose independent rect. 5 14
411 580.06 precipitation 0.1 30 < th dose dependent rect. 5 14
412 580.25 radiation 10.0 10 < th dose independent rect. 5 14
416 580.60 humidity 70.0 10 > th dose independent rect. 19 10
417 580.63 wind 5.0 43200 > th dose independent rect. 10 5
424 580.92 wind 5.0 43200 < th dose independent rect. 10 5
437 581.66 wind 7.0 43200 < th dose independent rect. 9 7
452 582.66 wind 7.0 43200 > th dose independent rect. 9 7
455 582.84 temperature 15.0 30 > th dose independent rect. 19 10
464 582.97 temperature 25.0 720 > th dose dependent rect. 5 3
469 583.03 temperature 30.0 30 < th dose independent rect. 19 10
470 583.03 humidity 50.0 30 > th dose independent rect. 19 10
472 583.03 atmosphere 995.0 30 > th dose independent rect. 19 10
478 583.03 temperature 10.0 30 > th dose independent rect. 5 14
480 583.03 atmosphere 1015.0 30 < th dose independent rect. 5 14
481 583.08 wind 9.0 30 < th dose independent rect. 19 10
504 583.90 wind 9.0 30 < th dose independent rect. 5 14
506 583.94 temperature 30.0 14400 > th dose independent rect. 15 3
508 583.95 wind 7.0 43200 < th dose independent rect. 5 11
520 584.32 temperature 30.0 14400 < th dose independent rect. 15 3
534 584.66 wind 7.0 43200 > th dose independent rect. 5 11
549 585.09 precipitation 0.1 270 < th dose independent rect. 3 14
550 585.09 precipitation 0.1 270 < th dose dependent rect. 3 14
563 585.58 temperature 30.0 14400 < th dose independent rect. 15 15
566 585.63 temperature 30.0 14400 < th dose independent rect. 15 13
570 585.67 temperature 30.0 14400 < th dose independent rect. 15 11
587 585.85 humidity 90.0 43200 > th dose dependent rect. 22 2
615 586.04 radiation 30.0 14400 < th dose independent rect. 17 3
649 586.93 radiation 30.0 14400 > th dose independent rect. 16 1
687 587.74 precipitation 0.1 90 < th dose independent rect. 3 16
688 587.74 precipitation 0.1 90 < th dose dependent rect. 3 16
713 588.32 wind 9.0 43200 < th dose dependent rect. 11 1
750 588.74 wind 7.0 43200 < th dose independent sin 1 NA
755 588.87 temperature 30.0 14400 < th dose independent sin 14 NA
756 588.90 humidity 90.0 43200 > th dose dependent rect. 13 13
763 589.12 radiation 30.0 14400 > th dose dependent rect. 16 1
785 589.23 temperature 30.0 14400 > th dose independent sin 14 NA
792 589.33 humidity 90.0 43200 > th dose dependent rect. 12 15
801 589.49 humidity 90.0 43200 > th dose dependent rect. 20 5
803 589.51 radiation 1.0 30 < th dose independent rect. 19 19
813 589.62 humidity 90.0 43200 > th dose dependent rect. 18 7
816 589.65 wind 7.0 43200 > th dose independent sin 1 NA
817 589.67 humidity 90.0 43200 > th dose dependent sin 16 NA
838 590.00 temperature 10.0 270 > th dose dependent rect. 13 18
845 590.15 temperature 25.0 14400 > th dose dependent rect. 17 1
925 590.86 radiation 40.0 14400 > th dose dependent rect. 15 17
926 590.87 temperature 25.0 4320 > th dose dependent rect. 6 4
948 591.03 temperature 10.0 90 > th dose dependent rect. 15 4