BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0592300 Os05g0592300|AK068520
(274 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277 228 2e-60
AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294 220 6e-58
AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283 167 8e-42
AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243 163 1e-40
AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243 162 2e-40
>AT5G39890.1 | chr5:15974543-15976013 FORWARD LENGTH=277
Length = 276
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 159/254 (62%), Gaps = 20/254 (7%)
Query: 15 KDLAATD--KDRPSSKKNRRRQKKPATSAAISPPVAAMQTLFDTSREVFQDSLPGFVPPP 72
KDL+ T+ + P ++ N R++ + + + PV Q LFDT ++VF D G VP
Sbjct: 13 KDLSKTNPNGNIPENRSNSRKKIQRRSKKTLICPV---QKLFDTCKKVFADGKSGTVPSQ 69
Query: 73 QAVARLAALLNDLKPHDVGIEPSMSCFKNADSKGPPRVTYLHFYDCPKFSFGIFCLPKSA 132
+ + L A+L+++KP DVG+ P MS F++ + P VTYLH Y C +FS IFCLP S
Sbjct: 70 ENIEMLRAVLDEIKPEDVGVNPKMSYFRSTVTGRSPLVTYLHIYACHRFSICIFCLPPSG 129
Query: 133 VIPLHNHPGMTVFCKILFGSMHLKSYDWAKSAPDNDNNALETSDGARLAKVNTDAVFDAS 192
VIPLHNHP MTVF K+LFG+MH+KSYDW +P + S RLAKV D+ F A
Sbjct: 130 VIPLHNHPEMTVFSKLLFGTMHIKSYDWVPDSP-------QPSSDTRLAKVKVDSDFTAP 182
Query: 193 SETTVLYPENGGNLHCFTARTACAVLDVMGPPYNRADGRDCSYYDESPYLSSSGGDAR-- 250
+T++LYP +GGN+HCFTA+TACAVLDV+GPPY+ GR C+YY + P+ S S
Sbjct: 183 CDTSILYPADGGNMHCFTAKTACAVLDVIGPPYSDPAGRHCTYYFDYPFSSFSVDGVVVA 242
Query: 251 ------YSWLKENH 258
Y+WLKE
Sbjct: 243 EEEKEGYAWLKERE 256
>AT5G15120.1 | chr5:4898814-4900351 FORWARD LENGTH=294
Length = 293
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 20/223 (8%)
Query: 47 VAAMQTLFDTSREVFQDSLPGFVPPPQAVARLAALLNDLKPHDVGIEPSMSCFK---NAD 103
+ A++ LF+T +EVF + PG +P + +L +L+D+KP DVG+ P+M F+ +
Sbjct: 55 ITAVRRLFNTCKEVFSNGGPGVIPSEDKIQQLREILDDMKPEDVGLTPTMPYFRPNSGVE 114
Query: 104 SKGPPRVTYLHFYDCPKFSFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSYDWAKS 163
++ P +TYLH + C +FS GIFCLP S VIPLHNHPGMTVF K+LFG+MH+KSYDW
Sbjct: 115 ARSSPPITYLHLHQCDQFSIGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD 174
Query: 164 APDNDNNALETSDGARLAKVNTDAVFDASSETTVLYPENGGNLHCFTARTACAVLDVMGP 223
AP D+ RLAK+ D+ F A ++LYPE+GGN+H FTA TACAVLDV+GP
Sbjct: 175 APMRDSK-------TRLAKLKVDSTFTAPCNASILYPEDGGNMHRFTAITACAVLDVLGP 227
Query: 224 PYNRADGRDCSYYDESPY----------LSSSGGDARYSWLKE 256
PY +GR C+Y+ E P LSS Y+WL+E
Sbjct: 228 PYCNPEGRHCTYFLEFPLDKLSSEDDDVLSSEEEKEGYAWLQE 270
>AT1G18490.1 | chr1:6367116-6368640 FORWARD LENGTH=283
Length = 282
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 126/230 (54%), Gaps = 26/230 (11%)
Query: 50 MQTLFDTSREVFQDSLPGFVPPPQAVARLAALLNDLKPHDVGIEP------------SMS 97
+Q L+D +E F P P A+ +L ++L+ + P DVG+E +S
Sbjct: 35 VQELYDLCKETFTGKAPS--PASMAIQKLCSVLDSVSPADVGLEEVSQDDDRGYGVSGVS 92
Query: 98 CFKNADSKGPPRVTYLHFYDCPKFSFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKS 157
F P +T+L ++C F+ IFC P S+VIPLH+HP M VF KIL+GS+H+K+
Sbjct: 93 RFNRVGRWAQP-ITFLDIHECDTFTMCIFCFPTSSVIPLHDHPEMAVFSKILYGSLHVKA 151
Query: 158 YDWAKS-APDNDNNALETSDGARLAKVNTDAVFDASSETTVLYPENGGNLHCFTARTACA 216
YDW + + + S ARLAK+ +D V SE LYP+ GGNLHCFTA T CA
Sbjct: 152 YDWVEPPCIITQDKGVPGSLPARLAKLVSDKVITPQSEIPALYPKTGGNLHCFTALTPCA 211
Query: 217 VLDVMGPPYNRADGRDCSYYDESPYLS----------SSGGDARYSWLKE 256
VLD++ PPY + GR CSYY + P+ + G + Y+WL +
Sbjct: 212 VLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQ 261
>AT2G42670.2 | chr2:17772004-17773700 REVERSE LENGTH=243
Length = 242
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 15/198 (7%)
Query: 51 QTLFDTSREVFQDSLPGFVPPPQAVARLAALLNDLKPHDVGIEPSMSCFK---------N 101
Q L++T + F P A+ ++ +L +KP DVGIE + N
Sbjct: 6 QRLYNTCKASFSSDGPIT---EDALEKVRNVLEKIKPSDVGIEQDAQLARSRSGPLNERN 62
Query: 102 ADSKGPPRVTYLHFYDCPKFSFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSYDWA 161
++ PP + YLH ++C FS GIFC+P S++IPLHNHPGMTV K+++GSMH+KSYDW
Sbjct: 63 GSNQSPPAIKYLHLHECDSFSIGIFCMPPSSMIPLHNHPGMTVLSKLVYGSMHVKSYDWL 122
Query: 162 KSAPDNDNNALETSDGARLAKVNTDAVFDASSETTVLYPENGGNLHCFTARTACAVLDVM 221
+ + S AR AK+ D A S T LYP++GGN+HCF A T CA+LD++
Sbjct: 123 EPQLTEPEDP---SQEARPAKLVKDTEMTAQSPVTTLYPKSGGNIHCFKAITHCAILDIL 179
Query: 222 GPPYNRADGRDCSYYDES 239
PPY+ R C+Y+ +S
Sbjct: 180 APPYSSEHDRHCTYFRKS 197
>AT3G58670.1 | chr3:21703693-21705314 REVERSE LENGTH=243
Length = 242
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 24/224 (10%)
Query: 50 MQTLFDTSREVFQDSLPGFVPPPQAVARLAALLNDLKPHDVGIE---------PSMSCFK 100
+Q LF+T + + P +A+ ++ +L +KP DVG+E P +
Sbjct: 5 IQRLFNTCKSSLSPNGPV---SEEALDKVRNVLEKIKPSDVGLEQEAQLVRNWPGPGNER 61
Query: 101 NADSKGPPRVTYLHFYDCPKFSFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSYDW 160
N + P + YL ++C FS GIFC+P ++IPLHNHPGMTV K+++GSMH+KSYDW
Sbjct: 62 NGNHHSLPAIKYLQLHECDSFSIGIFCMPPGSIIPLHNHPGMTVLSKLVYGSMHVKSYDW 121
Query: 161 AKSAPDNDNNALETSDGARLAKVNTDAVFDASSETTVLYPENGGNLHCFTARTACAVLDV 220
A+ D + L+ AR AK+ D + S T LYP GGN+HCF A T CA+ D+
Sbjct: 122 AEP----DQSELDDPLQARPAKLVKDIDMTSPSPATTLYPTTGGNIHCFKAITHCAIFDI 177
Query: 221 MGPPYNRADGRDCSYYDESPYLSSSG------GD--ARYSWLKE 256
+ PPY+ GR C+Y+ +SP L G G+ + +WL+E
Sbjct: 178 LSPPYSSTHGRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEE 221
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,789,158
Number of extensions: 296728
Number of successful extensions: 776
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 5
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)