BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0340900 Os03g0340900|AK066679
(892 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0340900 Similar to RSH1 1733 0.0
Os08g0457600 Similar to RSH2 205 1e-52
Os05g0161200 DNA polymerase III clamp loader subunit, C-ter... 122 2e-27
Os05g0161800 DNA polymerase III clamp loader subunit, C-ter... 116 8e-26
Os05g0161500 DNA polymerase III clamp loader subunit, C-ter... 113 8e-25
Os02g0699400 RelA/SpoT domain containing protein 86 9e-17
>Os03g0340900 Similar to RSH1
Length = 892
Score = 1733 bits (4489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/892 (94%), Positives = 840/892 (94%)
Query: 1 MQPPTGAVXXXXXXXXXXXXXXXXXWRGGGRPYECSVLSCAWNAPRALTGALASTTAQCS 60
MQPPTGAV WRGGGRPYECSVLSCAWNAPRALTGALASTTAQCS
Sbjct: 1 MQPPTGAVSGSSSSSLECVSSCRTSWRGGGRPYECSVLSCAWNAPRALTGALASTTAQCS 60
Query: 61 SCSHAEXXXXXXXXXXXXXXXXXLLHITWAEGINRGKFGYGSSAHSFPTGNFFKSWSTSV 120
SCSHAE LLHITWAEGINRGKFGYGSSAHSFPTGNFFKSWSTSV
Sbjct: 61 SCSHAEAGAGWRRRGQSQRSNNSLLHITWAEGINRGKFGYGSSAHSFPTGNFFKSWSTSV 120
Query: 121 DPTWRVFCYSSSESFNHISPETLWEDLKPAISYLQPEELNFVHDALKLAYEAHNGQKRRS 180
DPTWRVFCYSSSESFNHISPETLWEDLKPAISYLQPEELNFVHDALKLAYEAHNGQKRRS
Sbjct: 121 DPTWRVFCYSSSESFNHISPETLWEDLKPAISYLQPEELNFVHDALKLAYEAHNGQKRRS 180
Query: 181 GEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGE 240
GEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGE
Sbjct: 181 GEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGE 240
Query: 241 TKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQH 300
TKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQH
Sbjct: 241 TKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQH 300
Query: 301 KQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQEL 360
KQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQEL
Sbjct: 301 KQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQEL 360
Query: 361 EEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIII 420
EEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIII
Sbjct: 361 EEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIII 420
Query: 421 KPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLN 480
KPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLN
Sbjct: 421 KPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLN 480
Query: 481 ESMFHLEVQIRTEDMDLIAERGIAAHYXXXXXXXXXXXXXXXXXXNSNGKVICLNNTGFA 540
ESMFHLEVQIRTEDMDLIAERGIAAHY NSNGKVICLNNTGFA
Sbjct: 481 ESMFHLEVQIRTEDMDLIAERGIAAHYSGRGVVSGPVRPGISSGRNSNGKVICLNNTGFA 540
Query: 541 LRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYA 600
LRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYA
Sbjct: 541 LRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYA 600
Query: 601 YLIHTEIGNKMVAAKVNGNLVSPIHVLANAEVVEIIIYDKLSAKYAFQRHQQWLQHAKTR 660
YLIHTEIGNKMVAAKVNGNLVSPIHVLANAEVVEIIIYDKLSAKYAFQRHQQWLQHAKTR
Sbjct: 601 YLIHTEIGNKMVAAKVNGNLVSPIHVLANAEVVEIIIYDKLSAKYAFQRHQQWLQHAKTR 660
Query: 661 SARHKIMKFLREQAALSAAEITADAVNNFVADLEDESDYEQSIPSSENKDYTFNWQKILN 720
SARHKIMKFLREQAALSAAEITADAVNNFVADLEDESDYEQSIPSSENKDYTFNWQKILN
Sbjct: 661 SARHKIMKFLREQAALSAAEITADAVNNFVADLEDESDYEQSIPSSENKDYTFNWQKILN 720
Query: 721 SDKLSFGNKKSDCFLPVKNVSVPKVNGKHNKTVKELGIKINGSTFRGDSFTDFIHPGVSS 780
SDKLSFGNKKSDCFLPVKNVSVPKVNGKHNKTVKELGIKINGSTFRGDSFTDFIHPGVSS
Sbjct: 721 SDKLSFGNKKSDCFLPVKNVSVPKVNGKHNKTVKELGIKINGSTFRGDSFTDFIHPGVSS 780
Query: 781 SKEVLPSVDNWKAGKICAWHNTEGSSIQWLCIVCVDRKGMVAEVSSALTACGITICSCVA 840
SKEVLPSVDNWKAGKICAWHNTEGSSIQWLCIVCVDRKGMVAEVSSALTACGITICSCVA
Sbjct: 781 SKEVLPSVDNWKAGKICAWHNTEGSSIQWLCIVCVDRKGMVAEVSSALTACGITICSCVA 840
Query: 841 ERDKRRGIGVMLFHFEGAYENVVSACSGVDMILGVLGWSVGCSCNPLGVLEC 892
ERDKRRGIGVMLFHFEGAYENVVSACSGVDMILGVLGWSVGCSCNPLGVLEC
Sbjct: 841 ERDKRRGIGVMLFHFEGAYENVVSACSGVDMILGVLGWSVGCSCNPLGVLEC 892
>Os08g0457600 Similar to RSH2
Length = 718
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 195/339 (57%), Gaps = 25/339 (7%)
Query: 169 AYEAHNGQKRRSGEPFIIHPVEVARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENE 228
A AH GQ R SG+P++ H VE A +L + + ++AGLLHDT++D+ M +++I
Sbjct: 228 AERAHRGQTRASGDPYLQHCVETAVLLAKIGANATVVSAGLLHDTIDDSFM-DYDQIFRM 286
Query: 229 FGVTVRRIVEGETKVSKLGKLQCKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRL 288
FG V +VEG +K+S L KL ++ + + V+A+ L MFLAM + R +++KLADRL
Sbjct: 287 FGAGVADLVEGVSKLSHLSKL-ARDNNTASRTVEADRLHTMFLAMAD-ARAVLIKLADRL 344
Query: 289 HNMRTLTHMPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKR 348
HNM+T+ +P KQ A ET+++F PLA LG+ K +LE + F ++NP + EL +
Sbjct: 345 HNMKTIEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENICFKHLNPEEHKELSSK 404
Query: 349 VEDLYKAHEQELEEANQILGEKIAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSIN 408
L + ++ L + +K D+ + S+ + +S LYSIY +K +++
Sbjct: 405 ---LVISFDEALLTSTLDKLDKGLRDEGISYHSLSGRHKS----LYSIYSKMIKKNLTMD 457
Query: 409 EINQVAQLRIIIKPKSCNGVGPLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGY 468
+++ + LR+++ +Q CY L +VH +W + KDYI PK NGY
Sbjct: 458 DVHDIHGLRLVVD------------TEQDCYQALDIVHKLWPRVAGRFKDYILHPKLNGY 505
Query: 469 QSLHTTVIPFLNESMFHLEVQIRTEDMDLIAERGIAAHY 507
+SLHT + + E + EVQIRT++M L AE G AAH+
Sbjct: 506 RSLHTVI---MCEGIHPFEVQIRTKEMHLQAEYGFAAHW 541
>Os05g0161200 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 583
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 159/313 (50%), Gaps = 18/313 (5%)
Query: 199 ELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGETKV----SKLGKLQCKNE 254
++D E I+AG+L + + D ++ +++E G++ ++ ++ SKL L
Sbjct: 134 QMDAEVISAGILREAL-DAGAISMRDVKSEIGISTAHLLHESLRLKHAPSKLDVLD---- 188
Query: 255 GNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETLQVFA 314
D A LR+ L+ + +R +I++LA +L MR L +P++ Q ++E L+++A
Sbjct: 189 -----DESASALRKFCLSYYD-IRAVILELALKLDMMRHLDCLPRYLQRIKSLEVLKIYA 242
Query: 315 PLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQELEEANQILGEKIAED 374
PLA +G + ELE LSF Y+ P + + + + ++ ++ + L + + +D
Sbjct: 243 PLAHAVGAGNLSLELEDLSFRYLFPHSYDHIDQWLRSQETENKLLIDSYKEQLLQALKDD 302
Query: 375 QFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIIIKPKSCNGVGPLCTA 434
L + + ++ K +S K +K E+N + LR+I++P+ C+G L
Sbjct: 303 DELSQIVQDISIQGRYKSRFSTMKKLVKDGRKPEEVNDILALRVILEPR-CDG-SSLDWG 360
Query: 435 QQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLNESMFHL-EVQIRTE 493
+ C+ ++ +W +P K+Y+ PK NGYQSLH + M L E+QIRT+
Sbjct: 361 PRACHRTHEIIQAMWKEVPGRTKNYVTRPKENGYQSLHVAIDVSEPGKMRPLMEIQIRTK 420
Query: 494 DMDLIAERGIAAH 506
+M A G A+H
Sbjct: 421 EMHKFAVGGEASH 433
>Os05g0161800 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 578
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 14/322 (4%)
Query: 191 VARILGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQ 250
VA L + ++D E I+AG++ + DT + +E + G + +VE KV +
Sbjct: 106 VAASLADLQMDAEVISAGMVRGAL-DTGALAMADVEAQLGASAAGLVEESLKVKR----- 159
Query: 251 CKNEGNSKQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETL 310
+E + + A LR+ L+ + ++R +I++LA +L M+ L +P+H+Q ++E L
Sbjct: 160 APSEVDVADEEAASALRKRCLS-SYDIRAVILELAVKLDAMKHLDVLPKHQQRTTSLEVL 218
Query: 311 QVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQELEEANQILGEK 370
+VFA LA +G + ELE LSF + P +A + + + ++ + + + L
Sbjct: 219 KVFALLAHAVGAGELSLELEDLSFQRLYPQAYAHIDQWLSSQEDDCKRVIAASKEELLRA 278
Query: 371 IAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIIIKPK-SCNGVG 429
+ D L V K +S K +K ++N + +R+I+ P+ G G
Sbjct: 279 LTADDELRCTVTGVDVMGRYKSRFSTMKKLVKDGRRPEDVNDILGMRVILDPRPGGGGGG 338
Query: 430 PLCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVI-----PFLNESMF 484
+ C ++ +W +P KDYI PK NGY+SLH V P +
Sbjct: 339 DGDGGDRACLRTHEVIKAMWKDVPARTKDYITRPKGNGYRSLHVAVDMSEPGPEGKKRPL 398
Query: 485 HLEVQIRTEDMDLIAERGIAAH 506
+E+Q+RT +MD+ A G A+H
Sbjct: 399 -MEIQVRTREMDMAAVGGQASH 419
>Os05g0161500 DNA polymerase III clamp loader subunit, C-terminal domain
containing protein
Length = 559
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 36/371 (9%)
Query: 135 FNHISPETLWEDLKPAISYLQPEELNFVHDALKLAYEAHNGQKRRSGEPFIIHPVEVARI 194
FN ++ E + +D+ + S+ + ALKLA A + +G + + VA
Sbjct: 48 FNGLT-ERMGDDVATSSSW------TLLFRALKLALPA---LRDAAGGRSLARALIVAAS 97
Query: 195 LGEHELDWESIAAGLLHDTVEDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNE 254
L + ++D E I+AG++ + D V E + G ++ L L KN
Sbjct: 98 LADLQMDAEVISAGIVRQAM-DAGAVAMADAEAQLGPGAAALL--------LESLDVKN- 147
Query: 255 GNSKQDVKAED----LRQMFLAMTEEVRVIIVKLADRLHNMRTLTHMPQHKQYAIAMETL 310
S+ DV E+ +R L+ +VR +I++LA RL M+ L +P+H+Q ++E L
Sbjct: 148 APSRVDVADEEAASAVRNRILS-GYDVRAVILELAIRLDAMKHLDGVPKHQQRTTSLEVL 206
Query: 311 QVFAPLAKLLGMYRIKSELEYLSFMYMNPGDFAELKKRVEDLYKAHEQELEEANQILGEK 370
+VFAPLA +G + ELE LSF + P +A++ + + ++ L L +
Sbjct: 207 KVFAPLAHAVGAGALSKELEDLSFWRLYPQAYAQVDQWLSGQEDDCKRVLATCKDDLLQA 266
Query: 371 IAEDQFLDLVSVETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIIIKPKSCNGVGP 430
+A D L V+ K +S K +K +++ + +R+I+ ++ G G
Sbjct: 267 LAADDELRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILGMRVILDHRAGAGDG- 325
Query: 431 LCTAQQICYHVLGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVI-----PFLNESMFH 485
+ C ++ G+W +P KDYIA PK +GY+SLH V P +
Sbjct: 326 ----HRACIRTHEVIKGMWKDVPARTKDYIARPKGDGYRSLHIAVDMSEPGPEGKKRPL- 380
Query: 486 LEVQIRTEDMD 496
+EVQIRT++M+
Sbjct: 381 MEVQIRTKEMN 391
>Os02g0699400 RelA/SpoT domain containing protein
Length = 868
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 382 VETQVRSVCKELYSIYKTALKSKSSINEINQVAQLRIIIKPKSCNGVGPLCTAQQICYHV 441
+E + S K LYS+Y + I +I LR+II K+ GP A + CY V
Sbjct: 447 MEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGP---AVKNCYSV 503
Query: 442 LGLVHGIWTPIPQAVKDYIATPKPNGYQSLHTTVIPFLNESMFHLEVQIRTEDMDLIAER 501
L +V+ +WTPI DYI PK +GYQSLHT V N LEVQIRT+ M AE
Sbjct: 504 LDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSP---LEVQIRTQRMHEYAEY 560
Query: 502 GIAAHY 507
G+AAH+
Sbjct: 561 GLAAHW 566
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 19/204 (9%)
Query: 162 VHDALKLAYEAHNGQKRRSGEPFIIHPVEVARIL-------GEHELDWESIAAGLLHDTV 214
V A+ A AH GQ R++G+P++ H + +IL GE ++ ++ AG+LHD +
Sbjct: 140 VQKAIVFASTAHIGQFRKTGDPYVTHCIHTGKILAALVPSTGERAIN--TVVAGILHDVI 197
Query: 215 EDTDMVTFERIENEFGVTVRRIVEGETKVSKLGKLQCKNEGN--SKQDVKAEDLRQMFLA 272
+DT + IE +FG V +V G +K+S + ++ E S D + A
Sbjct: 198 DDT-AENLKSIEEQFGDDVASLVSGVSKLSYINQVMHMLEKTLLSADYCAGIDKKTPVEA 256
Query: 273 MTEEVRVIIVKLADRLHNMRTLTH-MPQHKQYAIAMETLQVFAPLAKLLGMYRIKSELEY 331
+ + + ++ + + ++ +P K A+A ETL V+ LA LG++ +K+ELE
Sbjct: 257 LLLQKKYVL------FYASKYFSYALPIRKAEAVAQETLAVWCSLASRLGVWALKAELED 310
Query: 332 LSFMYMNPGDFAELKKRVEDLYKA 355
L F + P F +++ + ++ +
Sbjct: 311 LCFAVLQPHVFKKMRSELTTMWNS 334
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,586,674
Number of extensions: 1154173
Number of successful extensions: 2763
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2745
Number of HSP's successfully gapped: 7
Length of query: 892
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 782
Effective length of database: 11,292,261
Effective search space: 8830548102
Effective search space used: 8830548102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)