BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0300000 Os03g0300000|AK060863
(348 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0300000 Similar to Xyloglucan 6-xylosyltransferase (EC... 697 0.0
Os02g0529600 Similar to Xyloglucan 6-xylosyltransferase (EC... 476 e-134
Os12g0149300 Similar to Xyloglucan 6-xylosyltransferase (EC... 448 e-126
Os03g0305800 Galactosyl transferase family protein 436 e-123
Os03g0306100 Galactosyl transferase family protein 436 e-123
Os02g0723200 Similar to Alpha galactosyltransferase (Fragment) 280 1e-75
Os11g0546500 Galactosyl transferase family protein 278 4e-75
>Os03g0300000 Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1)
Length = 348
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/348 (96%), Positives = 336/348 (96%)
Query: 1 TLRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHY 60
TLRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHY
Sbjct: 1 TLRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHY 60
Query: 61 LLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDA 120
LLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFW HPEIEFLWWMDSDA
Sbjct: 61 LLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWAKLPLLRALLLAHPEIEFLWWMDSDA 120
Query: 121 MFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPM 180
MFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPM
Sbjct: 121 MFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPM 180
Query: 181 GPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWG 240
GPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWG
Sbjct: 181 GPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWG 240
Query: 241 ILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQI 300
ILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQI
Sbjct: 241 ILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQI 300
Query: 301 LQMYGFTHKSLGSRKVKRIRNETSNPLDVKDELGLLHPAFKAMKTTST 348
LQMYGFTHKSLGSRKVKRIRNETSNPLDVKDELGLLHPAFKAMKTTST
Sbjct: 301 LQMYGFTHKSLGSRKVKRIRNETSNPLDVKDELGLLHPAFKAMKTTST 348
>Os02g0529600 Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1)
Length = 480
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 210/327 (64%), Positives = 262/327 (80%)
Query: 7 YTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIK 66
Y LGPKISDWD QR W R++P P V KPR+LLVTGS P PC+NP+GDHYLLK+ K
Sbjct: 144 YALGPKISDWDGQRRRWLRQNPGFPSTVAGGKPRILLVTGSQPGPCDNPLGDHYLLKTTK 203
Query: 67 NKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDAMFSDMA 126
NK+DYCR+HG+EI +N+A LD E+AG+W HPE+E++WWMDSDA+F+DMA
Sbjct: 204 NKIDYCRLHGIEIVHNLAHLDTELAGYWAKLPLLRRLMLSHPEVEWIWWMDSDALFTDMA 263
Query: 127 FELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPV 186
FELP RY NLI+HG+ +++++ +WI LNTGSFL RNCQWSLD LD WAPMGPKG +
Sbjct: 264 FELPLSRYQDRNLIIHGYQDLLFEKHSWIALNTGSFLFRNCQWSLDLLDAWAPMGPKGFI 323
Query: 187 RIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGILVDRY 246
R EAGK+LT LK RP FEADDQSA++Y+L +++EKW +KV++EN YYLHG+W LVD+Y
Sbjct: 324 RDEAGKILTANLKGRPAFEADDQSALIYLLLSQKEKWMNKVFIENSYYLHGFWAGLVDKY 383
Query: 247 EEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQILQMYGF 306
EEM+EN+HPGLGD RWP VTHFVGCKPCG +GDYPVERCL+ MERAFNF DNQ+L++YGF
Sbjct: 384 EEMMENHHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGF 443
Query: 307 THKSLGSRKVKRIRNETSNPLDVKDEL 333
HK L S K+KR+RN+T+ P+D K+ L
Sbjct: 444 AHKGLESPKIKRVRNQTTKPIDDKENL 470
>Os12g0149300 Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1)
Length = 463
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 199/325 (61%), Positives = 252/325 (77%)
Query: 7 YTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIK 66
YTLGPK++ W+ +R W R+P P KPR+LLVTGS P PC++ GDHYLLK+ K
Sbjct: 128 YTLGPKVTRWNAKRRQWLSRNPGFPSRDARGKPRILLVTGSQPAPCDDAAGDHYLLKATK 187
Query: 67 NKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDAMFSDMA 126
NK+DYCR+HG+EI ++MA LD E+AG+W HPE+E++WWMDSDA+F+DMA
Sbjct: 188 NKIDYCRIHGIEIVHSMAHLDRELAGYWAKLPLLRRLMLSHPEVEWVWWMDSDALFTDMA 247
Query: 127 FELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPV 186
FELP RY NL++HG+ E+++ ++WI LNTGSFLLRNCQWSL+ LD WAPMGPKG V
Sbjct: 248 FELPLARYDTSNLVIHGYPELLFAKRSWIALNTGSFLLRNCQWSLELLDAWAPMGPKGRV 307
Query: 187 RIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGILVDRY 246
R EAGKVLT L RP FEADDQSA+++IL T++E+W +KVY+E+ Y+LHG+W LVD+Y
Sbjct: 308 RDEAGKVLTASLTGRPAFEADDQSALIHILLTQKERWMEKVYVEDKYFLHGFWAGLVDKY 367
Query: 247 EEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQILQMYGF 306
EEM+E +HPGLGD RWP VTHFVGCKPCG +GDYP ERCL MERAFNF DNQ+L++YGF
Sbjct: 368 EEMMERHHPGLGDERWPFVTHFVGCKPCGGYGDYPRERCLGGMERAFNFADNQVLRLYGF 427
Query: 307 THKSLGSRKVKRIRNETSNPLDVKD 331
H+SL S +V+R+ N T NPL K+
Sbjct: 428 RHRSLASARVRRVANRTDNPLVNKE 452
>Os03g0305800 Galactosyl transferase family protein
Length = 483
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/351 (57%), Positives = 257/351 (73%), Gaps = 4/351 (1%)
Query: 2 LRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYL 61
L D PYTLGP ++ +D +RA W R H E P V +PRVL+VTGS+P+ C++P GDH L
Sbjct: 127 LTDSPYTLGPAVTGYDARRAEWLRDHTEFPASVGRGRPRVLMVTGSAPRRCKDPEGDHLL 186
Query: 62 LKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDAM 121
L+++KNK+DYCRVHG +IFY+ +LDAEM+GFW HPE E LWW+DSD +
Sbjct: 187 LRALKNKVDYCRVHGFDIFYSNTVLDAEMSGFWTKLPLLRALMLAHPETELLWWVDSDVV 246
Query: 122 FSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMG 181
F+DM FE PW RY +NL++HGWD VY K W+GLN GSF++RNCQWSLD LD WAPMG
Sbjct: 247 FTDMLFEPPWGRYRRHNLVIHGWDGAVYGAKTWLGLNAGSFIIRNCQWSLDLLDAWAPMG 306
Query: 182 PKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGI 241
P GPVR GK+ + L +RP +EADDQSA+V++L T+R +WG KV+LEN Y LHG+W
Sbjct: 307 PPGPVRDMYGKIFAETLTNRPPYEADDQSALVFLLVTQRHRWGAKVFLENSYNLHGFWAD 366
Query: 242 LVDRYEEMLENY-HPGLGDHRWPLVTHFVGCKPC-GKFGDYPVERCLKQMERAFNFGDNQ 299
+VDRYEEM + HPGLGD RWPL+THFVGCKPC G Y ERC + M+RAFNF D+Q
Sbjct: 367 IVDRYEEMRRQWRHPGLGDDRWPLITHFVGCKPCGGDDASYDGERCRRGMDRAFNFADDQ 426
Query: 300 ILQMYGFTHKSLGSRKVKRIRNETSNPLDVKD-ELG-LLHPAFKAMKTTST 348
IL++YGF H+SL + V+R+RN+T PLD + ELG LLHP FKA K ++
Sbjct: 427 ILELYGFAHESLDTMAVRRVRNDTGRPLDADNQELGRLLHPTFKARKKKTS 477
>Os03g0306100 Galactosyl transferase family protein
Length = 449
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 7/349 (2%)
Query: 2 LRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDV-KPRVLLVTGSSPKPCENPVGDHY 60
L DPPY+LG I +D +R+AW HPE P V +PRVL+VTGS+P C +P GDH
Sbjct: 104 LTDPPYSLGRTILGYDARRSAWLAAHPEFPARVAPAGRPRVLVVTGSAPARCPDPDGDHL 163
Query: 61 LLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDA 120
LL++ KNK+DYCR+HGL++FYN A LDAEM+GFW HPE E +WW+DSDA
Sbjct: 164 LLRAFKNKVDYCRIHGLDVFYNTAFLDAEMSGFWAKLPLLRMLMVAHPEAELIWWVDSDA 223
Query: 121 MFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPM 180
+F+DM FE+PWERY +NL++HGW+ V+D+K+WIG+NTGSFL+RNCQWSLD LD WAPM
Sbjct: 224 VFTDMLFEIPWERYAVHNLVLHGWEAKVFDEKSWIGVNTGSFLIRNCQWSLDLLDAWAPM 283
Query: 181 GPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWG 240
GP+GPVR G++ + L RP FEADDQSA++Y+L T+R++WGDKV++E+ Y L+G+W
Sbjct: 284 GPRGPVRDRYGELFAEELSGRPPFEADDQSALIYLLVTQRQRWGDKVFIESSYDLNGFWE 343
Query: 241 ILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGD-YPVERCLKQMERAFNFGDNQ 299
+VD+YEE+ G D RWP VTHFVGCKPC ++ D YP ERC + MERAFNF D+Q
Sbjct: 344 GIVDKYEEL---RRAGRDDGRWPFVTHFVGCKPCRRYADSYPAERCRRGMERAFNFADDQ 400
Query: 300 ILQMYGFTHKSLGSRKVKRIRNETSNPLDVKD-ELG-LLHPAFKAMKTT 346
IL++YGF H+SL + V+R+RNET PLD D ELG LLHP F+A + T
Sbjct: 401 ILKLYGFAHESLNTTAVRRVRNETGEPLDAGDEELGRLLHPTFRAARPT 449
>Os02g0723200 Similar to Alpha galactosyltransferase (Fragment)
Length = 447
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/340 (41%), Positives = 187/340 (55%), Gaps = 41/340 (12%)
Query: 7 YTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIK 66
YT+ I WDE+RA W R HPE RVL+V+GS P+PC +P GD L + +K
Sbjct: 91 YTIDRPIVGWDEKRAEWLRAHPE---LAGGGGERVLMVSGSQPEPCGSPAGDSLLTRLLK 147
Query: 67 NKMDYCRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDAMFSDMA 126
NK+DYCR++G+++ YN ALL M +W HPE E++WW+DSDA+ +DM
Sbjct: 148 NKLDYCRLNGVQLLYNTALLRPSMDRYWAKIPVVRAAMVAHPEAEWVWWVDSDAVLTDMD 207
Query: 127 FELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPV 186
F LP RY +N + HGW +VY+ ++W LN G FL+RNCQWSLDF+D WA MGP P
Sbjct: 208 FRLPLSRYRDHNFVAHGWPHLVYESRSWTSLNAGVFLIRNCQWSLDFMDAWAAMGPDSPE 267
Query: 187 RIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYW------- 239
G VLT KD+ E+DDQSA+VY+L W DKVYLE+ YY GYW
Sbjct: 268 YQHWGAVLTSTFKDKVFNESDDQSALVYMLLQSGSPWRDKVYLESDYYFEGYWLEIAGRL 327
Query: 240 GILVDRYEEMLENYHP-----------------------------GLGDHRWPLVTHFVG 270
G + +RYE M P G+ R P VTHF G
Sbjct: 328 GNITERYEAMERGAAPLRRRHAEAEHASYAAARDAALAGAGLAESGVSGWRRPFVTHFTG 387
Query: 271 CKPCGKFGD--YPVERCLKQMERAFNFGDNQILQMYGFTH 308
C+PC + Y + C + + RA +F D+Q+L+ YGF H
Sbjct: 388 CQPCSGHRNEHYTGKSCDEGIRRALSFADDQVLRAYGFRH 427
>Os11g0546500 Galactosyl transferase family protein
Length = 483
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 194/350 (55%), Gaps = 45/350 (12%)
Query: 13 ISDWDEQRAAWHR-RHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKMDY 71
I+ WD +RAAW R R+P + RV++V+GS PC GDH L + +KNK+DY
Sbjct: 124 ITGWDARRAAWMRLRYPRGLNATAAGRERVVMVSGSQAPPCRGEGGDHLLFRFLKNKVDY 183
Query: 72 CRVHGLEIFYNMALLDAEMAGFWXXXXXXXXXXXXHPEIEFLWWMDSDAMFSDMAFELPW 131
CR+HG+E+ YN ALL M +W HP+ E++WW+D+DA+F+DM F LP
Sbjct: 184 CRLHGVELLYNNALLQPRMLAYWAKIPAVRAAMLAHPDAEWVWWVDADAVFTDMDFSLPL 243
Query: 132 ERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPVRIEAG 191
+Y +NL+++GW++ VY +++W+GLN G FL+RNCQWSLDF+D WA MGP P G
Sbjct: 244 HKYKDHNLVVYGWNKEVYGERSWVGLNAGVFLIRNCQWSLDFMDAWARMGPASPEYARWG 303
Query: 192 KVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGILVDRYEEMLE 251
VL L+ + E+DDQSA+VY+L+ EKWG K YLE GY+ GYW +VDR +++
Sbjct: 304 SVLHDTLRGKSDKESDDQSALVYLLSEHEEKWGAKTYLEKGYFFQGYWVEVVDRLDDIAA 363
Query: 252 NYHP------GLGDH------------------------------------RWPLVTHFV 269
Y H R P VTHF
Sbjct: 364 RYEAAERRPSAAAAHLRRRHAEREHERYAAARNAAVRGAVPGPAGGGQSGWRRPFVTHFT 423
Query: 270 GCKPCGKFGD--YPVERCLKQMERAFNFGDNQILQMYGFTHKSLGSRKVK 317
GC+PCG + Y + C M RA NF D+Q+L+ YG+ HK S +V+
Sbjct: 424 GCQPCGGEPNKIYSKKSCADGMNRALNFADDQVLRNYGYRHKDPLSDEVR 473
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,225,186
Number of extensions: 586685
Number of successful extensions: 960
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)