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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0149300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0529) R2 : 0.732
β1 : -1.32 (0.275) R2dD : 0.0504 R2D : 0.22
β2 : 0.97 (0.0982) R2dC : 0.0578 R2C : 0.055
β3 : -2.45 (0.152) R2dE : 0.205 R2E : 0.359
β4 : -3.39 (0.396) R2dD*C : 0.0437 R2D*C : 0.062
β5 : 5.77 (0.838) R2dD*E : 0.0991 R2D*E : 0.275
γ1 : -0.214 (0.11) R2dN8 : 0.00497 R2N8 : 0.00554
σ : 0.751
deviance : 255.52
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C
peak time of C : 9.26
E
wheather : temperature
threshold : 25.83
memory length : 4676
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20.7
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.52 0.751 3.64 -1.32 0.97 -2.45 -3.39 5.77 -0.214 9.26 25.83 4676 20.7 --
277.82 0.776 3.74 -2.31 1.03 -2.38 -3.18 -- -0.059 8.75 22.69 10516 21.5 --
296.62 0.802 3.64 -1.43 0.982 -2.43 -- 5.7 -0.206 9.13 25.88 4640 20.6 --
315.26 0.827 3.76 -2.29 1.02 -2.54 -- -- -0.111 8.72 22.7 10401 19.5 --
338.18 0.856 3.67 -1.29 -- -2.47 -- 6.09 -0.151 -- 26.21 5279 20.8 --
406.72 0.945 3.97 -3.87 0.988 -- -3.41 -- -1.07 8.87 -- -- -- --
445.87 0.989 3.97 -3.99 1 -- -- -- -1.07 8.69 -- -- -- --
354.94 0.877 3.71 -0.775 -- -3.38 -- -- 0.139 -- 18.91 26960 21.9 --
330.61 0.847 3.66 -- 0.983 -3.66 -- -- 0.273 8.49 18.7 47520 21.7 --
502.8 1.05 4 -3.99 -- -- -- -- -1.06 -- -- -- -- --
865.38 1.38 3.87 -- 0.995 -- -- -- -0.626 8.99 -- -- -- --
347.63 0.868 3.66 -- -- -3.99 -- -- 0.201 -- 19.2 29720 18.5 --
922.2 1.42 3.9 -- -- -- -- -- -0.62 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.61 temperature 25.0 4320 > th dose independent rect. 10 1
2 244.00 temperature 25.0 4320 < th dose independent rect. 10 1
3 245.04 precipitation 0.1 14400 < th dose independent rect. 5 2
4 245.04 precipitation 0.1 14400 < th dose dependent rect. 5 2
5 245.39 radiation 20.0 43200 < th dose dependent rect. 4 1
7 245.50 precipitation 0.1 14400 > th dose independent rect. 5 2
8 245.50 precipitation 0.1 14400 > th dose dependent rect. 5 2
9 245.54 radiation 20.0 43200 < th dose dependent rect. 24 5
11 245.70 radiation 10.0 43200 < th dose dependent rect. 2 3
18 245.91 radiation 20.0 43200 < th dose dependent rect. 19 10
24 246.17 humidity 60.0 43200 < th dose independent rect. 10 1
43 247.49 humidity 60.0 43200 > th dose independent rect. 10 1
47 247.94 precipitation 0.1 14400 > th dose dependent rect. 2 6
49 248.09 precipitation 0.1 14400 < th dose independent rect. 2 6
50 248.09 precipitation 0.1 14400 < th dose dependent rect. 2 6
52 248.66 radiation 40.0 43200 > th dose dependent rect. 10 1
53 248.90 precipitation 0.1 14400 > th dose independent rect. 2 6
71 250.83 humidity 60.0 43200 > th dose independent rect. 18 1
77 251.58 radiation 40.0 43200 < th dose independent rect. 16 19
78 251.59 humidity 60.0 43200 < th dose independent rect. 18 1
79 251.62 radiation 40.0 43200 < th dose independent rect. 24 11
81 251.63 radiation 40.0 43200 < th dose independent rect. 4 7
82 251.63 radiation 40.0 43200 < th dose independent rect. 2 9
86 251.64 radiation 40.0 43200 < th dose independent rect. 20 15
90 251.65 radiation 40.0 43200 < th dose independent rect. 7 4
98 251.97 radiation 40.0 43200 > th dose dependent rect. 15 20
100 252.01 radiation 40.0 43200 > th dose dependent rect. 7 4
116 252.02 radiation 1.0 43200 < th dose independent rect. 24 5
119 252.10 radiation 40.0 43200 < th dose independent sin 10 NA
120 252.23 radiation 10.0 43200 > th dose dependent rect. 17 14
123 252.34 radiation 1.0 43200 < th dose independent rect. 20 9
131 252.53 radiation 40.0 43200 < th dose independent rect. 10 1
133 252.58 radiation 1.0 14400 < th dose independent rect. 8 2
160 252.92 radiation 1.0 43200 < th dose independent rect. 4 1
162 252.99 radiation 1.0 43200 < th dose independent rect. 2 3
166 253.14 radiation 10.0 43200 > th dose dependent rect. 5 2
178 253.18 radiation 20.0 43200 < th dose independent rect. 24 8
180 253.18 radiation 1.0 14400 > th dose dependent rect. 18 1
191 253.20 radiation 20.0 43200 < th dose independent rect. 2 6
194 253.21 radiation 20.0 43200 < th dose independent rect. 4 4
196 253.22 radiation 20.0 43200 < th dose independent rect. 20 12
204 253.29 humidity 70.0 43200 < th dose independent rect. 20 1
230 253.69 radiation 1.0 43200 > th dose independent rect. 4 1
270 253.88 radiation 1.0 14400 > th dose independent rect. 8 2
285 253.96 radiation 40.0 43200 > th dose dependent sin 11 NA
306 254.16 radiation 20.0 4320 < th dose dependent rect. 18 11
344 254.40 humidity 50.0 43200 < th dose dependent rect. 10 1
356 254.46 wind 5.0 43200 > th dose dependent rect. 13 2
367 254.53 humidity 60.0 43200 < th dose independent rect. 15 3
409 255.11 radiation 20.0 43200 < th dose independent rect. 17 10
417 255.32 radiation 20.0 43200 < th dose independent rect. 17 8
423 255.35 radiation 20.0 43200 < th dose independent sin 11 NA
432 255.41 radiation 20.0 43200 < th dose independent rect. 17 1
496 255.68 humidity 90.0 43200 > th dose independent rect. 19 6
515 255.73 radiation 20.0 43200 < th dose independent rect. 17 5
535 255.80 humidity 60.0 43200 < th dose dependent rect. 18 2
540 255.92 humidity 50.0 43200 < th dose independent rect. 16 20
586 256.11 radiation 40.0 43200 < th dose independent rect. 24 17
596 256.12 radiation 40.0 43200 < th dose independent no NA NA
597 256.12 radiation 40.0 43200 < th dose independent rect. 6 11
633 256.12 radiation 40.0 43200 < th dose independent rect. 4 21
643 256.12 radiation 40.0 43200 < th dose independent rect. 2 23
645 256.12 radiation 40.0 43200 < th dose independent rect. 6 23
654 256.13 radiation 40.0 43200 > th dose independent rect. 10 1
719 256.28 radiation 40.0 43200 < th dose independent rect. 10 23
726 256.31 humidity 50.0 43200 > th dose independent rect. 16 20
796 256.67 wind 5.0 43200 > th dose dependent rect. 11 4
914 257.28 wind 7.0 43200 < th dose independent rect. 14 1
929 257.31 humidity 60.0 43200 < th dose independent rect. 10 8
933 257.35 humidity 50.0 43200 < th dose independent rect. 17 18
936 257.37 temperature 25.0 4320 < th dose independent rect. 17 1
976 257.62 radiation 1.0 14400 < th dose dependent rect. 9 1
983 257.64 humidity 90.0 43200 > th dose independent rect. 22 2