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Os03g0300000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0266) R2 : 0.468
β1 : -1.68 (0.0976) R2dD : 0.358 R2D : 0.332
β2 : 0.732 (0.0691) R2dC : 0.132 R2C : 0.12
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.12 (0.0569) R2dN8 : 0.00691 R2N8 : -0.013
σ : 0.501
deviance : 114.51
__
_____
C
peak time of C : 4.95
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.78 0.472 10.2 -1.62 0.898 0.746 -0.525 0.451 -0.116 8.54 21.26 6 -- --
101.29 0.469 10.2 -1.62 0.934 0.806 -0.898 -- -0.116 8.79 21.59 5 -- --
101.25 0.469 10.2 -1.63 0.884 0.728 -- 0.733 -0.114 8.46 21.64 5 -- --
104.04 0.475 10.2 -1.65 0.9 0.755 -- -- -0.117 8.52 21.83 5 -- --
118.18 0.506 10.2 -1.54 -- 0.557 -- -0.28 -0.111 -- 0.355 618 -- --
114.45 0.502 10.2 -1.68 0.73 -- 0.171 -- -0.119 4.87 -- -- -- --
114.51 0.501 10.2 -1.68 0.732 -- -- -- -0.12 4.95 -- -- -- --
114.04 0.497 10.2 -1.6 -- 0.81 -- -- -0.0838 -- 0.3 626 -- --
176.15 0.618 10.1 -- 0.883 0.754 -- -- 0.0736 8.58 23.25 6 -- --
142.73 0.558 10.2 -1.65 -- -- -- -- -0.101 -- -- -- -- --
188.72 0.643 10.2 -- 0.702 -- -- -- 0.0673 5.03 -- -- -- --
181.42 0.627 10.2 -- -- 0.884 -- -- 0.0232 -- 0.009999 647 -- --
214.65 0.684 10.2 -- -- -- -- -- 0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.48 atmosphere 1000.0 90 > th dose dependent rect. 2 7
3 94.87 atmosphere 995.0 270 > th dose independent rect. 5 10
5 94.91 wind 9.0 270 < th dose independent rect. 5 10
6 94.93 temperature 10.0 270 > th dose independent rect. 5 10
7 94.93 atmosphere 1015.0 270 < th dose independent rect. 5 10
8 94.93 temperature 10.0 270 > th dose independent rect. 15 14
10 95.09 precipitation 0.1 270 < th dose independent rect. 5 10
11 95.09 radiation 40.0 270 < th dose independent rect. 15 14
12 95.09 precipitation 0.1 270 < th dose dependent rect. 5 10
13 95.18 wind 9.0 270 < th dose independent rect. 9 15
15 95.27 precipitation 0.1 270 < th dose independent rect. 9 15
16 95.27 precipitation 0.1 270 < th dose dependent rect. 9 15
17 95.37 radiation 40.0 270 < th dose independent rect. 24 9
21 95.42 atmosphere 1000.0 10 > th dose dependent rect. 3 6
23 95.53 precipitation 0.1 270 < th dose independent rect. 24 9
24 95.53 precipitation 0.1 270 < th dose dependent rect. 24 9
28 95.62 wind 1.0 270 > th dose independent rect. 15 14
31 95.68 wind 9.0 270 < th dose independent rect. 24 9
32 95.68 temperature 10.0 270 > th dose independent rect. 24 9
34 95.68 humidity 50.0 270 > th dose independent rect. 24 9
35 95.68 atmosphere 995.0 270 > th dose independent rect. 24 9
36 95.68 atmosphere 1015.0 270 < th dose independent rect. 24 9
37 95.68 wind 9.0 270 < th dose independent rect. 15 14
38 95.68 temperature 10.0 270 > th dose independent rect. 9 15
42 95.72 temperature 20.0 270 > th dose independent rect. 14 6
52 95.73 precipitation 0.1 90 < th dose independent rect. 9 18
53 95.73 precipitation 0.1 90 < th dose dependent rect. 9 18
60 95.86 temperature 15.0 90 > th dose independent rect. 3 17
61 95.88 wind 7.0 90 < th dose independent rect. 20 7
63 95.95 temperature 10.0 90 > th dose independent rect. 20 7
64 95.95 temperature 30.0 90 < th dose independent rect. 20 7
65 95.95 humidity 50.0 90 > th dose independent rect. 20 7
68 95.95 atmosphere 995.0 90 > th dose independent rect. 20 7
69 95.95 radiation 1.0 90 < th dose independent rect. 20 7
75 95.95 atmosphere 1015.0 90 < th dose independent rect. 3 17
76 95.95 radiation 1.0 90 < th dose dependent rect. 20 7
83 95.97 temperature 20.0 270 > th dose independent rect. 15 4
84 95.97 temperature 30.0 270 < th dose independent rect. 24 9
85 95.99 radiation 1.0 30 > th dose independent sin 23 NA
87 96.01 precipitation 0.1 90 < th dose independent rect. 20 7
88 96.01 precipitation 0.1 90 < th dose dependent rect. 20 7
91 96.07 radiation 40.0 90 < th dose independent rect. 17 16
94 96.11 atmosphere 995.0 90 > th dose independent rect. 9 8
96 96.16 wind 9.0 90 < th dose independent rect. 9 8
97 96.19 radiation 1.0 30 > th dose independent rect. 9 9
99 96.26 wind 9.0 90 < th dose dependent rect. 20 7
100 96.28 precipitation 0.1 90 < th dose independent rect. 9 8
101 96.28 precipitation 0.1 90 < th dose dependent rect. 9 8
102 96.37 temperature 15.0 270 > th dose independent rect. 1 18
103 96.38 temperature 10.0 90 > th dose independent rect. 9 8
104 96.38 atmosphere 1015.0 90 < th dose independent rect. 9 8
105 96.38 temperature 10.0 90 > th dose independent rect. 17 16
109 96.44 wind 1.0 270 > th dose independent rect. 1 18
110 96.47 radiation 40.0 90 < th dose dependent rect. 16 17
111 96.48 atmosphere 995.0 90 > th dose independent rect. 17 16
123 96.53 humidity 50.0 90 > th dose independent rect. 17 16
125 96.53 atmosphere 1015.0 270 < th dose independent rect. 1 18
136 96.55 wind 9.0 90 < th dose independent rect. 9 18
159 96.67 radiation 40.0 10 < th dose dependent rect. 16 17
164 96.71 atmosphere 1005.0 90 > th dose independent rect. 3 6
165 96.71 temperature 10.0 90 > th dose dependent rect. 2 7
167 96.73 wind 9.0 90 < th dose independent rect. 3 17
169 96.74 radiation 40.0 90 < th dose independent rect. 3 6
170 96.74 wind 9.0 90 < th dose independent rect. 17 16
175 96.78 wind 7.0 270 < th dose independent rect. 19 20
177 96.86 humidity 60.0 90 > th dose independent rect. 3 6
179 96.87 precipitation 0.1 270 < th dose independent rect. 15 14
180 96.87 precipitation 0.1 270 < th dose dependent rect. 15 14
185 96.90 temperature 10.0 1440 > th dose independent rect. 10 8
188 96.90 temperature 10.0 1440 > th dose independent rect. 18 16
194 96.94 wind 7.0 270 < th dose independent rect. 20 18
197 96.96 wind 9.0 90 < th dose independent rect. 3 6
198 96.96 temperature 10.0 90 > th dose independent rect. 3 6
201 96.96 atmosphere 995.0 90 > th dose independent rect. 3 6
202 96.96 atmosphere 1015.0 90 < th dose independent rect. 3 6
203 96.96 temperature 10.0 90 > th dose independent rect. 9 18
207 97.00 precipitation 0.1 90 < th dose independent rect. 3 6
208 97.00 precipitation 0.1 90 < th dose dependent rect. 3 6
210 97.01 precipitation 0.1 270 < th dose independent rect. 1 18
211 97.01 precipitation 0.1 270 < th dose dependent rect. 1 18
217 97.06 wind 9.0 270 < th dose independent rect. 1 18
281 97.16 atmosphere 995.0 270 > th dose independent rect. 19 20
286 97.18 radiation 10.0 10 < th dose dependent rect. 4 16
288 97.20 radiation 1.0 30 < th dose independent rect. 4 16
291 97.21 humidity 50.0 90 > th dose independent rect. 3 17
297 97.24 atmosphere 995.0 270 > th dose independent rect. 15 14
299 97.25 temperature 10.0 270 > th dose independent rect. 15 4
301 97.25 atmosphere 1010.0 270 < th dose independent rect. 15 4
303 97.25 temperature 10.0 270 > th dose independent rect. 14 6
304 97.25 atmosphere 1015.0 270 < th dose independent rect. 14 6
306 97.25 temperature 10.0 270 > th dose independent rect. 20 18
307 97.25 atmosphere 995.0 270 > th dose independent rect. 20 18
308 97.25 temperature 10.0 270 > th dose independent rect. 19 20
309 97.26 temperature 30.0 90 < th dose independent rect. 3 6
317 97.30 atmosphere 995.0 90 > th dose independent rect. 3 17
319 97.31 radiation 40.0 270 < th dose independent rect. 15 4
321 97.32 wind 1.0 270 > th dose independent rect. 15 4
323 97.33 wind 1.0 270 > th dose independent rect. 14 6
324 97.34 atmosphere 995.0 270 > th dose independent rect. 9 16
333 97.40 radiation 40.0 270 < th dose dependent rect. 1 8
336 97.41 radiation 1.0 270 > th dose independent rect. 5 10
337 97.41 atmosphere 1015.0 90 < th dose independent rect. 17 16
338 97.41 atmosphere 1015.0 270 < th dose dependent rect. 15 4
354 97.47 wind 1.0 90 > th dose independent rect. 9 8
359 97.48 precipitation 0.1 270 < th dose independent rect. 19 20
361 97.48 precipitation 0.1 270 < th dose dependent rect. 19 20
364 97.49 atmosphere 995.0 90 > th dose independent rect. 9 18
379 97.56 wind 1.0 270 > th dose independent rect. 6 9
380 97.56 precipitation 0.1 270 < th dose independent rect. 20 18
381 97.56 precipitation 0.1 270 < th dose dependent rect. 20 18
385 97.58 wind 9.0 270 < th dose independent rect. 15 4
387 97.58 atmosphere 995.0 270 > th dose independent rect. 1 18
389 97.60 wind 9.0 270 < th dose independent rect. 14 6
409 97.67 temperature 10.0 90 > th dose dependent rect. 9 8
414 97.71 temperature 10.0 10 > th dose independent rect. 20 7
415 97.71 temperature 30.0 10 < th dose independent rect. 20 7
416 97.71 humidity 50.0 10 > th dose independent rect. 20 7
420 97.71 atmosphere 995.0 10 > th dose independent rect. 20 7
421 97.71 radiation 1.0 10 < th dose independent rect. 20 7
426 97.71 temperature 10.0 10 > th dose independent rect. 3 17
428 97.71 atmosphere 1015.0 10 < th dose independent rect. 3 17
430 97.71 radiation 1.0 10 < th dose dependent rect. 20 7
459 97.74 wind 9.0 270 < th dose dependent rect. 9 15
471 97.78 precipitation 0.1 10 < th dose independent rect. 20 7
474 97.78 precipitation 0.1 10 < th dose dependent rect. 20 7
499 97.86 radiation 40.0 270 < th dose independent rect. 14 6
518 97.88 atmosphere 1015.0 270 < th dose independent rect. 15 15
525 97.90 wind 1.0 270 > th dose independent rect. 19 6
536 97.93 temperature 10.0 10 > th dose dependent rect. 9 7
539 97.94 wind 9.0 90 < th dose dependent rect. 9 8
581 98.08 humidity 50.0 270 > th dose dependent rect. 1 8
593 98.13 radiation 1.0 270 < th dose dependent rect. 5 21
595 98.14 wind 9.0 90 < th dose dependent rect. 3 6
610 98.18 radiation 1.0 270 < th dose dependent rect. 6 19
637 98.21 precipitation 0.1 270 < th dose independent rect. 15 4
653 98.21 precipitation 0.1 270 < th dose dependent rect. 15 4
655 98.21 radiation 10.0 4320 < th dose dependent rect. 21 7
665 98.22 temperature 10.0 90 > th dose dependent rect. 17 16
724 98.31 humidity 50.0 90 > th dose dependent rect. 20 7
728 98.32 wind 9.0 10 < th dose independent rect. 9 18
757 98.35 precipitation 0.1 10 < th dose independent rect. 3 17
759 98.35 precipitation 0.1 10 < th dose dependent rect. 3 17
808 98.46 precipitation 0.1 270 < th dose independent rect. 14 6
824 98.46 precipitation 0.1 270 < th dose dependent rect. 14 6
847 98.51 wind 1.0 270 > th dose independent rect. 1 8
895 98.53 atmosphere 1015.0 270 < th dose dependent rect. 14 6
896 98.54 atmosphere 995.0 270 > th dose independent rect. 15 4
913 98.58 radiation 1.0 270 < th dose dependent rect. 9 16
956 98.61 radiation 1.0 270 < th dose dependent rect. 15 10
965 98.63 temperature 10.0 1440 > th dose independent rect. 21 7
968 98.63 temperature 30.0 1440 < th dose independent rect. 21 7
972 98.63 humidity 50.0 1440 > th dose independent rect. 21 7
978 98.63 atmosphere 995.0 1440 > th dose independent rect. 21 7
979 98.63 radiation 1.0 1440 < th dose independent rect. 21 7
1000 98.63 temperature 10.0 1440 > th dose independent rect. 4 17