Os02g0529600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0529600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.42 | 0.246 | 10.5 | -0.313 | 0.877 | 0.324 | -0.197 | 0.298 | -0.0525 | 23.7 | 19.7 | 274 | -- | -- |
| 27.61 | 0.245 | 10.5 | -0.349 | 0.867 | 0.269 | -0.206 | -- | -0.0612 | 23.7 | 20.1 | 336 | -- | -- |
| 27.57 | 0.245 | 10.5 | -0.305 | 0.882 | 0.32 | -- | 0.318 | -0.0549 | 23.7 | 19.8 | 248 | -- | -- |
| 27.8 | 0.246 | 10.5 | -0.336 | 0.868 | 0.267 | -- | -- | -0.062 | 23.7 | 20.09 | 336 | -- | -- |
| 63.89 | 0.372 | 10.5 | -0.256 | -- | 0.587 | -- | 0.527 | -0.11 | -- | 24.9 | 873 | -- | -- |
| 29.67 | 0.255 | 10.5 | -0.256 | 0.858 | -- | -0.192 | -- | -0.0138 | 23.6 | -- | -- | -- | -- |
| 29.83 | 0.256 | 10.5 | -0.249 | 0.859 | -- | -- | -- | -0.0131 | 23.6 | -- | -- | -- | -- |
| 62.84 | 0.369 | 10.5 | -0.371 | -- | 0.547 | -- | -- | -0.194 | -- | 25 | 856 | -- | -- |
| 30.43 | 0.257 | 10.5 | -- | 0.867 | 0.17 | -- | -- | -0.0175 | 23.7 | 20.5 | 317 | -- | -- |
| 76.14 | 0.408 | 10.4 | -0.225 | -- | -- | -- | -- | -0.00342 | -- | -- | -- | -- | -- |
| 31.46 | 0.262 | 10.5 | -- | 0.856 | -- | -- | -- | 0.0146 | 23.6 | -- | -- | -- | -- |
| 66.76 | 0.381 | 10.5 | -- | -- | 0.485 | -- | -- | -0.139 | -- | 24.92 | 832 | -- | -- |
| 77.48 | 0.411 | 10.4 | -- | -- | -- | -- | -- | 0.0216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.52 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 2 | 25.73 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 7 | 26.00 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 26.01 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 11 | 26.02 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 12 |
| 14 | 26.05 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 34 | 26.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 12 |
| 35 | 26.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 38 | 26.17 | temperature | 20.0 | 270 | > th | dose independent | sin | 12 | NA |
| 39 | 26.17 | temperature | 20.0 | 720 | > th | dose independent | sin | 17 | NA |
| 48 | 26.20 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 51 | 26.21 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 59 | 26.23 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 71 | 26.25 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 106 | 26.33 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 107 | 26.33 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 108 | 26.33 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 118 | 26.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 134 | 26.37 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 140 | 26.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 147 | 26.39 | temperature | 30.0 | 720 | < th | dose independent | sin | 6 | NA |
| 159 | 26.40 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 173 | 26.41 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 178 | 26.42 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 180 | 26.42 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 185 | 26.42 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 210 | 26.45 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 226 | 26.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 237 | 26.46 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 238 | 26.47 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 265 | 26.49 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 276 | 26.49 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 277 | 26.49 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 9 |
| 280 | 26.50 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 292 | 26.50 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 303 | 26.51 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 312 | 26.51 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 319 | 26.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 336 | 26.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 338 | 26.53 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 350 | 26.53 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 382 | 26.53 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 389 | 26.53 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 394 | 26.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 452 | 26.56 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 475 | 26.56 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 518 | 26.57 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 595 | 26.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 596 | 26.59 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 602 | 26.60 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 690 | 26.62 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 710 | 26.62 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 824 | 26.65 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 903 | 26.67 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 936 | 26.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 946 | 26.68 | temperature | 20.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 960 | 26.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 969 | 26.69 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 7 |