BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0288000 Os03g0288000|AK103162
         (72 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0288000  Similar to Metallothionein                          109   4e-25
Os11g0704500  Metallothionein-like protein type 1                  93   3e-20
Os12g0570700  Similar to Metallothionein-like protein type 1       80   4e-16
Os12g0571000  Plant metallothionein, family 15 protein             75   9e-15
Os12g0567800  Plant metallothionein, family 15 protein             72   6e-14
Os12g0571100  Similar to Metallothionein-like protein type 1       72   1e-13

>Os03g0288000 Similar to Metallothionein
          Length = 72

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 19 KMYPDLEEKSSSAQATVVLGVAPEKAHFEAAAESGETAHGCGCGSSCKCNPCNC 72
          KMYPDLEEKSSSAQATVVLGVAPEKAHFEAAAESGETAHGCGCGSSCKCNPCNC
Sbjct: 19 KMYPDLEEKSSSAQATVVLGVAPEKAHFEAAAESGETAHGCGCGSSCKCNPCNC 72



>Os11g0704500 Metallothionein-like protein type 1
          Length = 74

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 49/56 (87%), Gaps = 2/56 (3%)

Query: 19 KMYPDLEEKSSSAQATVVLGVAPEKA--HFEAAAESGETAHGCGCGSSCKCNPCNC 72
          K YPDLEEKSSS +ATVVLGVAPEK    FEAAAESGETAHGC CGSSC+CNPCNC
Sbjct: 19 KKYPDLEEKSSSTKATVVLGVAPEKKAQQFEAAAESGETAHGCSCGSSCRCNPCNC 74



>Os12g0570700 Similar to Metallothionein-like protein type 1
          Length = 78

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 3/57 (5%)

Query: 19 KMYPDLEEKSSSAQATVVLGVAPEKAHFEA---AAESGETAHGCGCGSSCKCNPCNC 72
           MYPDL EK+++  AT+VLGVAP K  FE    AAESGE AHGC CGSSCKCNPCNC
Sbjct: 22 NMYPDLAEKTTNTSATMVLGVAPAKEQFEGVGKAAESGEAAHGCSCGSSCKCNPCNC 78



>Os12g0571000 Plant metallothionein, family 15 protein
          Length = 65

 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 6/60 (10%)

Query: 19 KMYPDLEEKSSSAQA--TVVLGVAPEK----AHFEAAAESGETAHGCGCGSSCKCNPCNC 72
          KMYPDL EK+++     T++LGVAPEK    A FEAAA SGE  HGC CGSSCKCNPCNC
Sbjct: 6  KMYPDLAEKNTTITTSDTMILGVAPEKGRGEAVFEAAAGSGEADHGCSCGSSCKCNPCNC 65



>Os12g0567800 Plant metallothionein, family 15 protein
          Length = 78

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 42/59 (71%), Gaps = 5/59 (8%)

Query: 19 KMYPDLEEKSSSAQATV--VLGVAPEKAHFEA---AAESGETAHGCGCGSSCKCNPCNC 72
          KMYPDL EK +    T   VLGVAPEK  FE    AAESGE AHGC CGSSCKCNPCNC
Sbjct: 20 KMYPDLAEKITITTTTTTTVLGVAPEKGQFEGVGKAAESGEGAHGCSCGSSCKCNPCNC 78



>Os12g0571100 Similar to Metallothionein-like protein type 1
          Length = 78

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 45/59 (76%), Gaps = 5/59 (8%)

Query: 19 KMYPDLEEK--SSSAQATVVLGVAPEKAHFEA---AAESGETAHGCGCGSSCKCNPCNC 72
          KMYPDL EK  +++  AT VLGVAPEK H E    AAESGE AHGC CGSSC+CNPCNC
Sbjct: 20 KMYPDLAEKITTTTTTATTVLGVAPEKGHSEGVGKAAESGEAAHGCSCGSSCRCNPCNC 78



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.125    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,051,035
Number of extensions: 57400
Number of successful extensions: 286
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)