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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0571100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metallothionein-like protein type 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.0837) R2 : 0.618
β1 : -9.88 (0.448) R2dD : 0.997 R2D : 0.322
β2 : 1.03 (0.208) R2dC : 0.0204 R2C : -0.0425
β3 : -0.858 (0.3) R2dE : 0.00787 R2E : -0.0725
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.27 (1.29) R2dD*E : 0.101 R2D*E : -0.419
γ1 : -2.35 (0.195) R2dN8 : 0.214 R2N8 : -0.0452
σ : 1.49
deviance : 1024.08
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_____
C
peak time of C : 5.94
E
wheather : radiation
threshold : 1.052
memory length : 4334
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.04
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1023.32 1.5 6.4 -9.9 1.02 -0.841 0.599 9.12 -2.35 6.05 1.051 4330 5.1 --
1148.79 1.59 6.23 -7.38 1.08 -0.525 0.55 -- -1.69 4.17 0.1705 4318 5.74 --
1024.08 1.49 6.4 -9.88 1.03 -0.858 -- 9.27 -2.35 5.94 1.052 4334 5.04 --
1124.56 1.56 6.21 -7.41 1.03 -1.01 -- -- -1.8 6.67 0.2903 4304 7 --
1078.35 1.53 6.42 -9.79 -- -0.888 -- 9.01 -2.32 -- 1.054 4334 5.12 --
1152.76 1.59 6.21 -7.37 0.975 -- 0.596 -- -1.69 6.21 -- -- -- --
1153.63 1.59 6.22 -7.36 0.978 -- -- -- -1.69 6.24 -- -- -- --
1174.11 1.6 6.22 -7.44 -- -0.97 -- -- -1.8 -- 0.33 10107 6.99 --
2344.8 2.26 6.22 -- 1.26 -2.22 -- -- -1.21 5.92 8.764 4333 6.45 --
1203.2 1.62 6.23 -7.33 -- -- -- -- -1.67 -- -- -- -- --
2580.89 2.38 6.03 -- 0.88 -- -- -- -0.869 6.68 -- -- -- --
2191.86 2.18 6.28 -- -- -3.91 -- -- -1.38 -- 8.134 8634 7.45 --
2621.33 2.39 6.05 -- -- -- -- -- -0.854 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 983.75 humidity 80.0 43200 > th dose dependent rect. 8 1
2 986.14 humidity 80.0 43200 > th dose dependent rect. 7 3
4 987.77 humidity 90.0 43200 < th dose independent rect. 6 3
5 987.84 radiation 1.0 43200 > th dose independent rect. 18 12
7 988.70 humidity 90.0 43200 > th dose independent rect. 6 1
8 988.74 humidity 80.0 43200 > th dose dependent rect. 6 5
10 989.30 radiation 1.0 43200 < th dose independent rect. 24 6
11 989.33 radiation 1.0 43200 < th dose independent rect. 20 10
15 989.39 radiation 1.0 43200 < th dose independent rect. 2 4
18 989.42 radiation 1.0 43200 < th dose independent rect. 4 2
20 989.53 humidity 80.0 43200 > th dose dependent rect. 18 3
21 989.66 radiation 1.0 43200 > th dose independent rect. 4 2
32 990.13 humidity 80.0 43200 < th dose independent rect. 18 1
41 991.94 humidity 80.0 43200 < th dose independent rect. 8 12
43 992.04 humidity 80.0 43200 > th dose independent rect. 9 2
44 992.09 humidity 80.0 43200 > th dose independent rect. 8 12
70 992.78 humidity 80.0 43200 > th dose dependent rect. 6 16
74 993.26 humidity 80.0 43200 > th dose independent rect. 15 5
76 993.36 humidity 80.0 43200 < th dose independent rect. 15 5
102 994.94 radiation 1.0 43200 < th dose independent rect. 17 1
109 995.16 humidity 80.0 43200 < th dose independent rect. 9 2
113 995.34 radiation 1.0 43200 > th dose independent rect. 17 1
130 996.38 radiation 1.0 43200 > th dose independent sin 12 NA
166 996.99 radiation 1.0 43200 < th dose independent sin 11 NA
175 997.17 humidity 90.0 43200 > th dose independent rect. 4 11
178 997.26 humidity 90.0 43200 < th dose independent rect. 4 12
187 997.42 humidity 70.0 43200 > th dose dependent rect. 9 11
208 998.02 humidity 80.0 43200 > th dose independent rect. 12 9
216 998.27 humidity 80.0 43200 > th dose independent rect. 18 1
274 999.47 humidity 80.0 43200 > th dose independent rect. 8 4
321 1000.44 humidity 90.0 43200 < th dose independent rect. 4 19
355 1000.72 precipitation 0.1 43200 > th dose dependent rect. 2 5
358 1000.80 humidity 80.0 43200 > th dose dependent sin 23 NA
385 1001.14 humidity 90.0 43200 > th dose independent rect. 4 17
392 1001.21 radiation 1.0 43200 < th dose independent rect. 17 10
394 1001.22 radiation 1.0 43200 < th dose independent rect. 17 5
395 1001.22 radiation 1.0 43200 < th dose independent rect. 17 8
406 1001.28 humidity 70.0 43200 > th dose dependent rect. 8 6
419 1001.46 precipitation 0.1 43200 > th dose independent rect. 3 2
421 1001.49 precipitation 0.1 43200 < th dose independent rect. 3 2
422 1001.49 precipitation 0.1 43200 < th dose dependent rect. 3 2
423 1001.50 humidity 90.0 43200 < th dose independent sin 2 NA
429 1001.55 humidity 90.0 43200 > th dose independent sin 2 NA
447 1001.78 precipitation 0.1 43200 > th dose independent rect. 2 5
477 1002.09 precipitation 0.1 43200 < th dose independent rect. 2 5
479 1002.09 precipitation 0.1 43200 < th dose dependent rect. 2 5
534 1002.82 radiation 1.0 43200 < th dose dependent rect. 20 10
550 1002.88 radiation 1.0 43200 < th dose dependent rect. 23 7
553 1002.90 radiation 1.0 43200 < th dose dependent rect. 5 1
599 1003.15 radiation 1.0 43200 < th dose dependent rect. 3 3
663 1003.79 humidity 80.0 43200 < th dose independent rect. 8 6
675 1003.98 atmosphere 1010.0 43200 > th dose dependent rect. 10 1
752 1004.66 radiation 1.0 43200 > th dose independent no NA NA
753 1004.66 radiation 1.0 43200 > th dose independent rect. 4 15
798 1004.67 precipitation 0.1 43200 > th dose dependent rect. 3 2
812 1004.74 precipitation 0.1 43200 > th dose dependent rect. 23 9
825 1004.81 atmosphere 1010.0 43200 > th dose independent rect. 15 1
827 1004.81 precipitation 0.1 43200 > th dose independent rect. 23 9
845 1004.93 precipitation 0.1 43200 < th dose independent rect. 23 9
848 1004.93 precipitation 0.1 43200 < th dose dependent rect. 23 9
852 1004.99 radiation 1.0 43200 < th dose independent rect. 3 16
853 1004.99 radiation 1.0 43200 < th dose independent rect. 3 18
865 1004.99 radiation 1.0 43200 < th dose independent rect. 20 23
866 1005.00 radiation 1.0 43200 < th dose independent no NA NA
903 1005.04 radiation 1.0 43200 < th dose dependent rect. 17 1
938 1005.15 atmosphere 1010.0 43200 > th dose independent rect. 10 2
947 1005.16 temperature 25.0 43200 < th dose independent rect. 1 9
951 1005.18 temperature 25.0 43200 > th dose independent rect. 24 10
977 1005.43 humidity 70.0 43200 > th dose dependent rect. 10 1