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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0567800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant metallothionein, family 15 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0178) R2 : 0.402
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.76 (0.333) R2dE : 0.393 R2E : 0.385
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.118 (0.0375) R2dN8 : 0.0167 R2N8 : 0.00883
σ : 0.335
deviance : 51.59
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.47
memory length : 46
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.3
open length of G : 1.19

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.81 0.332 3.04 -0.221 0.105 1.73 -0.338 -8.37 0.0914 3 18.91 69 2.24 0.95
50.27 0.33 3.05 -0.224 0.0869 5.46 -0.151 -- 0.0637 5.21 18.5 50 2.31 1.18
50.16 0.33 3.04 -0.219 0.106 1.79 -- -8.34 0.0879 3.68 18.94 75 2.28 0.95
50.16 0.33 3.05 -0.18 0.109 5.62 -- -- 0.0931 4.07 18.47 48 2.28 1.19
50.78 0.332 3.04 -0.205 -- 1.79 -- -8.52 0.0975 -- 18.9 75 2.29 0.978
79.61 0.418 3.06 -0.315 0.169 -- -0.816 -- 0.0572 3.62 -- -- -- --
81.62 0.423 3.05 -0.301 0.168 -- -- -- 0.0618 4.01 -- -- -- --
50.78 0.332 3.05 -0.177 -- 5.68 -- -- 0.0975 -- 18.48 48 2.29 1.18
51.03 0.333 3.04 -- 0.103 5.72 -- -- 0.114 3.99 18.46 46 2.28 1.2
83.15 0.426 3.05 -0.295 -- -- -- -- 0.0663 -- -- -- -- --
84.02 0.429 3.05 -- 0.162 -- -- -- 0.0954 4.04 -- -- -- --
51.59 0.335 3.04 -- -- 5.76 -- -- 0.118 -- 18.47 46 2.3 1.19
85.44 0.431 3.05 -- -- -- -- -- 0.099 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.22 temperature 20.0 90 < th dose dependent rect. 2 1
5 61.88 temperature 20.0 90 < th dose independent rect. 2 1
16 62.77 temperature 20.0 270 < th dose dependent rect. 24 4
25 64.00 atmosphere 1005.0 90 < th dose independent rect. 2 1
26 64.00 atmosphere 1005.0 10 < th dose independent rect. 3 1
52 65.57 humidity 90.0 90 > th dose dependent rect. 2 1
53 65.63 temperature 20.0 30 < th dose dependent rect. 2 7
73 66.65 temperature 20.0 270 < th dose independent rect. 24 4
96 67.39 temperature 20.0 720 < th dose dependent rect. 16 1
97 67.45 temperature 20.0 720 < th dose independent rect. 16 1
109 67.84 humidity 90.0 90 > th dose independent rect. 2 1
183 69.92 atmosphere 1010.0 30 < th dose dependent rect. 2 3
187 70.01 precipitation 0.1 270 > th dose independent rect. 1 1
188 70.01 precipitation 0.1 270 > th dose dependent rect. 1 1
195 70.17 wind 9.0 10 > th dose independent rect. 18 1
198 70.17 wind 9.0 10 > th dose dependent rect. 18 1
265 71.03 wind 9.0 90 > th dose dependent rect. 16 18
266 71.04 wind 9.0 90 > th dose dependent rect. 16 10
300 71.20 wind 9.0 90 > th dose independent rect. 17 17
302 71.21 wind 9.0 90 > th dose independent rect. 17 9
311 71.22 wind 9.0 90 > th dose independent rect. 17 5
320 71.25 wind 1.0 90 > th dose independent rect. 2 2
390 71.63 wind 9.0 90 > th dose independent sin 13 NA
393 71.67 wind 5.0 90 < th dose independent rect. 2 2
419 71.91 wind 9.0 90 > th dose dependent sin 13 NA
431 72.04 wind 9.0 90 < th dose independent rect. 4 22
433 72.06 wind 9.0 90 > th dose independent rect. 12 6
435 72.08 wind 5.0 10 < th dose independent rect. 3 1
445 72.08 wind 9.0 90 > th dose independent rect. 12 11
551 72.43 temperature 30.0 10 < th dose independent rect. 5 21
554 72.44 wind 9.0 90 > th dose dependent rect. 13 5
558 72.46 precipitation 0.1 90 < th dose independent rect. 2 2
560 72.46 precipitation 0.1 90 < th dose dependent rect. 2 2
567 72.52 atmosphere 1000.0 90 > th dose independent rect. 2 2
568 72.52 wind 3.0 270 < th dose independent rect. 24 3
573 72.56 atmosphere 995.0 90 > th dose independent rect. 4 22
577 72.57 temperature 10.0 90 > th dose independent rect. 2 2
579 72.57 temperature 30.0 90 < th dose independent rect. 2 2
580 72.57 humidity 50.0 90 > th dose independent rect. 2 2
586 72.57 radiation 1.0 90 < th dose independent rect. 2 2
591 72.57 temperature 10.0 90 > th dose independent rect. 4 22
592 72.57 radiation 1.0 90 < th dose dependent rect. 2 2
599 72.59 precipitation 0.1 90 < th dose independent rect. 4 22
600 72.59 precipitation 0.1 90 < th dose dependent rect. 4 22
605 72.60 wind 9.0 90 > th dose dependent rect. 13 13
663 72.63 wind 9.0 10 < th dose independent rect. 4 23
676 72.66 humidity 90.0 720 > th dose dependent rect. 16 4
683 72.72 humidity 80.0 270 > th dose dependent rect. 24 1
692 72.78 humidity 90.0 720 > th dose dependent rect. 17 2
694 72.79 temperature 15.0 1440 < th dose dependent rect. 4 1
696 72.80 humidity 90.0 720 > th dose independent rect. 16 4
704 72.86 wind 9.0 90 < th dose dependent rect. 2 2
713 72.88 wind 1.0 270 > th dose independent rect. 24 4
750 73.03 temperature 15.0 1440 < th dose independent rect. 4 1
752 73.03 atmosphere 995.0 10 > th dose independent rect. 4 23
757 73.05 temperature 10.0 10 > th dose independent rect. 3 1
761 73.05 humidity 50.0 10 > th dose independent rect. 3 1
768 73.05 radiation 1.0 10 < th dose independent rect. 3 1
794 73.05 radiation 1.0 10 < th dose dependent rect. 3 1
816 73.08 wind 9.0 1440 < th dose independent rect. 3 2
817 73.08 temperature 10.0 1440 > th dose independent rect. 3 2
820 73.08 temperature 30.0 1440 < th dose independent rect. 3 2
824 73.08 humidity 50.0 1440 > th dose independent rect. 3 2
833 73.08 atmosphere 995.0 1440 > th dose independent rect. 3 2
834 73.08 radiation 20.0 1440 < th dose independent rect. 3 2
846 73.08 temperature 10.0 1440 > th dose independent rect. 5 22
916 73.17 temperature 20.0 720 < th dose dependent rect. 12 6
974 73.21 humidity 90.0 270 > th dose independent rect. 24 1