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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0288000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metallothionein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0598) R2 : 0.681
β1 : -1.3 (0.329) R2dD : 0.0254 R2D : -0.185
β2 : 0.786 (0.155) R2dC : 0.018 R2C : -0.0145
β3 : 5.02 (0.219) R2dE : 0.423 R2E : 0.155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.7 (0.967) R2dD*E : 0.562 R2D*E : 0.211
γ1 : 0.996 (0.13) R2dN8 : 0.0585 R2N8 : 0.00931
σ : 1.11
deviance : 571.09
__
_____
C
peak time of C : 6.56
E
wheather : radiation
threshold : 0.17
memory length : 4314
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
578.45 1.13 4.36 -1.23 0.812 5.1 -0.241 17.7 0.989 7.03 0.17 4320 17.9 12
911.09 1.41 4.62 -0.629 0.783 5.08 -0.161 -- 1.1 6.69 4.491 7197 17.5 12.1
571.09 1.11 4.31 -1.3 0.786 5.02 -- 17.7 0.996 6.56 0.17 4314 17.9 11.8
846.54 1.36 4.59 0.633 0.517 4.98 -- -- 1.31 6.64 3.87 7182 17.5 12.4
603.01 1.14 4.32 -1.29 -- 5 -- 17.8 1.02 -- 0.17 4314 17.9 11.8
1396.97 1.75 4.41 3.52 0.741 -- 0.103 -- 1.04 8.61 -- -- -- --
1397 1.75 4.41 3.53 0.742 -- -- -- 1.04 8.56 -- -- -- --
829.29 1.34 4.59 1.68 -- 4.54 -- -- 1.54 -- 3.406 7173 17.5 12.5
850.4 1.36 4.49 -- 0.633 5.73 -- -- 1.28 5.87 4.539 7177 17.5 12.4
1427.92 1.77 4.43 3.53 -- -- -- -- 1.04 -- -- -- -- --
1724.68 1.94 4.5 -- 0.758 -- -- -- 0.643 8.22 -- -- -- --
865.39 1.37 4.49 -- -- 5.71 -- -- 1.53 -- 4.539 7182 17.5 12.4
1756.38 1.96 4.51 -- -- -- -- -- 0.651 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 502.88 precipitation 0.1 43200 > th dose dependent rect. 16 1
2 503.68 precipitation 0.1 43200 > th dose independent rect. 16 1
4 504.22 precipitation 0.1 43200 > th dose dependent rect. 13 4
5 504.60 precipitation 0.1 43200 < th dose independent rect. 16 1
6 504.60 precipitation 0.1 43200 < th dose dependent rect. 16 1
10 511.15 humidity 80.0 43200 > th dose independent rect. 16 1
11 511.55 precipitation 0.1 43200 > th dose independent rect. 13 7
12 511.74 precipitation 0.1 43200 < th dose independent rect. 13 7
13 511.74 precipitation 0.1 43200 < th dose dependent rect. 13 7
14 514.44 precipitation 0.1 43200 > th dose independent rect. 13 4
15 515.01 precipitation 0.1 43200 < th dose independent rect. 13 4
16 515.01 precipitation 0.1 43200 < th dose dependent rect. 13 4
17 518.62 precipitation 0.1 43200 > th dose independent rect. 15 5
18 518.84 precipitation 0.1 43200 < th dose independent rect. 15 5
19 518.84 precipitation 0.1 43200 < th dose dependent rect. 15 5
30 522.08 humidity 80.0 43200 > th dose independent rect. 14 4
34 523.57 humidity 80.0 43200 > th dose dependent rect. 15 4
35 523.92 precipitation 0.1 43200 < th dose independent rect. 19 1
36 523.92 precipitation 0.1 43200 < th dose dependent rect. 19 1
37 524.31 precipitation 0.1 43200 > th dose independent rect. 19 1
39 525.65 humidity 80.0 43200 > th dose dependent rect. 9 1
40 525.76 precipitation 0.1 43200 > th dose dependent rect. 3 1
41 526.02 humidity 80.0 43200 > th dose dependent rect. 16 2
51 529.80 precipitation 0.1 43200 > th dose dependent rect. 19 1
58 530.81 humidity 80.0 43200 > th dose independent rect. 9 9
59 530.89 humidity 80.0 43200 < th dose independent rect. 14 3
68 533.24 wind 9.0 43200 > th dose dependent rect. 18 1
70 533.60 humidity 80.0 43200 < th dose independent rect. 13 5
72 534.05 humidity 80.0 43200 > th dose dependent rect. 8 3
75 534.36 humidity 90.0 43200 > th dose independent rect. 20 1
78 535.42 humidity 80.0 43200 > th dose dependent rect. 7 12
90 536.56 humidity 80.0 43200 < th dose independent rect. 9 9
109 538.28 precipitation 0.1 43200 < th dose independent rect. 3 2
110 538.28 precipitation 0.1 43200 < th dose dependent rect. 3 2
113 538.37 humidity 90.0 43200 < th dose independent rect. 19 2
114 538.64 humidity 90.0 43200 < th dose independent rect. 7 2
117 539.11 precipitation 0.1 43200 > th dose independent rect. 3 2
124 539.76 precipitation 0.1 43200 > th dose dependent rect. 13 1
141 541.19 humidity 80.0 43200 < th dose independent rect. 10 1
146 541.69 precipitation 0.1 43200 > th dose dependent rect. 13 7
171 543.32 humidity 90.0 43200 > th dose independent rect. 7 3
229 547.10 humidity 90.0 43200 < th dose dependent rect. 17 1
251 548.07 precipitation 0.1 43200 > th dose dependent rect. 13 16
259 548.65 humidity 90.0 43200 < th dose independent rect. 6 15
263 548.85 humidity 90.0 43200 < th dose dependent rect. 14 4
283 550.15 wind 9.0 43200 > th dose independent rect. 18 1
287 550.35 humidity 80.0 43200 > th dose independent rect. 10 1
294 550.66 precipitation 0.1 43200 > th dose dependent rect. 16 4
311 551.34 humidity 90.0 43200 < th dose independent rect. 15 6
313 551.45 humidity 80.0 43200 > th dose dependent sin 22 NA
316 551.72 radiation 20.0 14400 > th dose dependent rect. 7 1
330 552.30 precipitation 0.1 43200 > th dose dependent rect. 2 18
386 554.21 humidity 90.0 43200 > th dose independent rect. 6 16
387 554.25 precipitation 0.1 43200 < th dose independent rect. 13 11
388 554.25 precipitation 0.1 43200 < th dose dependent rect. 13 11
389 554.31 precipitation 0.1 43200 > th dose independent rect. 13 11
401 554.83 wind 9.0 43200 < th dose independent rect. 18 1
440 555.95 precipitation 0.1 43200 > th dose dependent rect. 23 21
501 557.99 precipitation 0.1 43200 < th dose independent rect. 13 15
503 557.99 precipitation 0.1 43200 < th dose dependent rect. 13 15
504 558.03 precipitation 0.1 43200 > th dose independent rect. 13 15
534 558.93 precipitation 0.1 43200 < th dose independent rect. 15 13
535 558.93 precipitation 0.1 43200 < th dose dependent rect. 15 13
537 558.96 precipitation 0.1 43200 > th dose independent sin 18 NA
538 558.96 precipitation 0.1 43200 > th dose independent rect. 15 13
540 559.06 precipitation 0.1 43200 < th dose independent sin 18 NA
541 559.06 precipitation 0.1 43200 < th dose dependent sin 18 NA
559 559.98 humidity 90.0 43200 > th dose dependent rect. 20 1
577 560.44 radiation 20.0 14400 < th dose dependent rect. 18 12
585 560.70 humidity 90.0 43200 < th dose independent rect. 6 8
606 561.31 humidity 90.0 43200 < th dose independent sin 21 NA
609 561.35 precipitation 0.1 43200 > th dose independent rect. 15 10
610 561.41 precipitation 0.1 43200 < th dose independent rect. 15 10
611 561.41 precipitation 0.1 43200 < th dose dependent rect. 15 10
632 561.73 precipitation 0.1 43200 < th dose independent rect. 13 1
633 561.73 precipitation 0.1 43200 < th dose dependent rect. 13 1
635 561.88 precipitation 0.1 43200 > th dose independent rect. 13 1
648 562.41 precipitation 0.1 43200 > th dose dependent rect. 23 9
672 562.92 humidity 80.0 43200 > th dose independent sin 22 NA
735 564.31 humidity 90.0 43200 > th dose independent rect. 6 8
778 565.06 precipitation 0.1 43200 > th dose dependent sin 14 NA
863 567.37 radiation 20.0 14400 < th dose dependent rect. 22 8
893 567.93 radiation 20.0 14400 < th dose dependent rect. 3 3
900 567.99 radiation 20.0 14400 < th dose dependent rect. 1 5