BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0288000 Os03g0288000|AK103162
         (72 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02380.1  | chr5:506755-507164 REVERSE LENGTH=78                47   1e-06
AT3G09390.1  | chr3:2889737-2890188 REVERSE LENGTH=82              46   3e-06

>AT5G02380.1 | chr5:506755-507164 REVERSE LENGTH=78
          Length = 77

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 5/54 (9%)

Query: 21 YPDLEEKSSSAQATVVLGVAPE-KAHFEAAAESGETAH-GCGCGSSCKCNPCNC 72
          YPDLE   ++A  T+VLGVAP   + +EA+ E+    +  C CGS CKCNPC C
Sbjct: 26 YPDLE---NTATETLVLGVAPAMNSQYEASGETFVAENDACKCGSDCKCNPCTC 76



>AT3G09390.1 | chr3:2889737-2890188 REVERSE LENGTH=82
          Length = 81

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 20 MYPDLE-EKSSSAQATVVLGVAPE-KAHFEAAAESGETAH-GCGCGSSCKCNPCNC 72
          MYPDL     ++   T VLGVAP  K  +EA+ ES    +  C CGS CKC+PC C
Sbjct: 25 MYPDLGFSGETTTTETFVLGVAPAMKNQYEASGESNNAENDACKCGSDCKCDPCTC 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.125    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,243,589
Number of extensions: 31983
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)