Os12g0571000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant metallothionein, family 15 protein.
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Os12g0571000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant metallothionein, family 15 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 418.46 | 0.961 | 3.47 | -1.06 | 0.524 | -0.476 | 0.598 | 2.61 | -0.577 | 2.23 | 3 | 7 | -- | -- |
| 433.78 | 0.97 | 3.45 | -0.906 | 0.694 | -0.401 | 0.356 | -- | -0.438 | 1.74 | 27.05 | 2 | -- | -- |
| 434.16 | 0.978 | 3.44 | -0.83 | 0.704 | -0.4 | -- | 0.555 | -0.412 | 1.97 | 28.25 | 11 | -- | -- |
| 434.78 | 0.971 | 3.44 | -0.863 | 0.725 | -0.41 | -- | -- | -0.424 | 1.88 | 27.04 | 2 | -- | -- |
| 456.2 | 0.995 | 3.42 | -0.767 | -- | -0.0101 | -- | 0.736 | -0.378 | -- | 29.93 | 12 | -- | -- |
| 441.16 | 0.985 | 3.43 | -0.825 | 0.523 | -- | 0.583 | -- | -0.406 | 2.22 | -- | -- | -- | -- |
| 442.39 | 0.985 | 3.44 | -0.842 | 0.527 | -- | -- | -- | -0.41 | 2.42 | -- | -- | -- | -- |
| 447.43 | 0.989 | 3.43 | -0.817 | -- | 0.317 | -- | -- | -0.386 | -- | 1.25 | 69 | -- | -- |
| 453.94 | 0.992 | 3.42 | -- | 0.715 | -0.418 | -- | -- | -0.328 | 1.85 | 27.15 | 2 | -- | -- |
| 458.8 | 1 | 3.43 | -0.82 | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
| 461.07 | 1 | 3.41 | -- | 0.511 | -- | -- | -- | -0.316 | 2.39 | -- | -- | -- | -- |
| 459.16 | 0.998 | 3.42 | -- | -- | 0.394 | -- | -- | -0.315 | -- | 1.09 | 391 | -- | -- |
| 476.52 | 1.02 | 3.41 | -- | -- | -- | -- | -- | -0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 405.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 2 | 405.86 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 1 |
| 12 | 405.86 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 22 | 406.50 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 406.73 | radiation | 10 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 24 | 407.06 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 25 | 407.07 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 27 | 407.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 30 | 408.03 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 38 | 408.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 42 | 409.55 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 71 | 410.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 101 | 410.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 111 | 410.63 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 135 | 411.11 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 151 | 411.26 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 161 | 411.68 | radiation | 10 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 162 | 411.68 | temperature | 10 | 43200 | < th | dose dependent | sin | 1 | NA |
| 174 | 412.05 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 175 | 412.05 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 178 | 412.07 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 235 | 412.38 | radiation | 10 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 270 | 412.65 | humidity | 80 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 274 | 412.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 285 | 412.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 338 | 413.16 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 380 | 413.48 | temperature | 10 | 43200 | < th | dose independent | sin | 3 | NA |
| 387 | 413.56 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 407 | 413.78 | temperature | 10 | 43200 | > th | dose independent | sin | 3 | NA |
| 413 | 413.85 | humidity | 80 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 470 | 414.23 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 506 | 414.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 513 | 414.53 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 526 | 414.63 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 531 | 414.71 | radiation | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 560 | 414.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 565 | 414.89 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 574 | 415.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 575 | 415.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 582 | 415.06 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 583 | 415.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 586 | 415.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 590 | 415.10 | temperature | 10 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 591 | 415.10 | temperature | 10 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 594 | 415.11 | temperature | 10 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 598 | 415.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 640 | 415.23 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 657 | 415.30 | humidity | 90 | 270 | < th | dose independent | rect. | 4 | 2 |
| 703 | 415.48 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 712 | 415.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 796 | 415.78 | temperature | 10 | 43200 | < th | dose independent | no | NA | NA |
| 927 | 416.07 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 973 | 416.18 | temperature | 10 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 975 | 416.19 | temperature | 10 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 985 | 416.20 | temperature | 10 | 43200 | > th | dose independent | rect. | 14 | 23 |