BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0267500 Os03g0267500|AK061753
(441 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0267500 Protein of unknown function DUF620 family protein 728 0.0
Os05g0252100 Protein of unknown function DUF620 family protein 351 8e-97
Os03g0606100 Protein of unknown function DUF620 family protein 325 3e-89
Os03g0167400 Protein of unknown function DUF620 family protein 229 2e-60
Os07g0591100 Protein of unknown function DUF620 family protein 207 1e-53
Os10g0411000 153 2e-37
Os12g0581300 Protein of unknown function DUF620 family protein 150 2e-36
>Os03g0267500 Protein of unknown function DUF620 family protein
Length = 441
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/441 (82%), Positives = 366/441 (82%)
Query: 1 MRKLCPNLERDDALDTVLEVPIPEEMXXXXXXXXXXXXXXXXCTNVKSWVRPNASDRSGG 60
MRKLCPNLERDDALDTVLEVPIPEEM CTNVKSWVRPNASDRSGG
Sbjct: 1 MRKLCPNLERDDALDTVLEVPIPEEMFSRGSGGGGSRGSRFGCTNVKSWVRPNASDRSGG 60
Query: 61 AGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQY 120
AGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQY
Sbjct: 61 AGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQY 120
Query: 121 IAASGGEWALNKVTNMYAMGKVRMTAAELNSSDADXXXXXXXXXXXXXXXXXXXXXXXXF 180
IAASGGEWALNKVTNMYAMGKVRMTAAELNSSDAD F
Sbjct: 121 IAASGGEWALNKVTNMYAMGKVRMTAAELNSSDADGGGGGGGGHRGGKKSSKNGGEVGGF 180
Query: 181 VLWQKKPELWSLELVVSGCKISAGSDGKVAWRQTPWHQSHAXXXXXXXXXXXXXXXDPML 240
VLWQKKPELWSLELVVSGCKISAGSDGKVAWRQTPWHQSHA DPML
Sbjct: 181 VLWQKKPELWSLELVVSGCKISAGSDGKVAWRQTPWHQSHASRGPPRPLRRSLQGLDPML 240
Query: 241 TASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTGLLV 300
TASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTGLLV
Sbjct: 241 TASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTGLLV 300
Query: 301 QLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFGDSSDGNT 360
QLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFGDSSDGNT
Sbjct: 301 QLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFGDSSDGNT 360
Query: 361 RTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLKDSKEDKDVSXXXXXXXXXXXXXXXXXXX 420
RTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLKDSKEDKDVS
Sbjct: 361 RTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLKDSKEDKDVSAAVKPARPPPIRIPAVAVR 420
Query: 421 XGPSQVAAVNMDDSDSLIARS 441
GPSQVAAVNMDDSDSLIARS
Sbjct: 421 VGPSQVAAVNMDDSDSLIARS 441
>Os05g0252100 Protein of unknown function DUF620 family protein
Length = 488
Score = 351 bits (900), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 202/407 (49%), Positives = 252/407 (61%), Gaps = 32/407 (7%)
Query: 1 MRKLCPNLERDDALDTVLEVPIPEEMXXXXXXXXXXXXXXXXCTNVKSWVRPNASDRSGG 60
MRK+CPNL+R+D LDTVLEVP+PE VKSWVR A G
Sbjct: 1 MRKVCPNLDREDGLDTVLEVPVPE----LHRQAPRRRGRRGGGGTVKSWVR--ARMEHGR 54
Query: 61 AGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPI--ESSTAKYIIQ 118
+ + SR E+QLMLGV+GAPL+P V+ K +P+ E+S A+YI++
Sbjct: 55 RRDGAAPSRAEVQLMLGVVGAPLVPQAVEARKAMVAGRGVGGEGEEPLDLEASKARYIVE 114
Query: 119 QYIAASGGEWALNKVTNMYAMGKVRMTAAELNSSDADXXXXXXXXXXXXXXXXXXXXXXX 178
QY+AA+GGE AL T+MYAMGKVRM + ++
Sbjct: 115 QYVAAAGGEAALGAATSMYAMGKVRMRTTTTSKAN----------KGKVMGVAAGGEVAG 164
Query: 179 XFVLWQKKPELWSLELVVSG-CKISAGSDGKVAWRQTPWHQSHAXXXXXXXXXXXXXXXD 237
FV+WQKKP+LW +E+VV+G K+SAGSDGKVAWRQTPW ++HA D
Sbjct: 165 GFVVWQKKPDLWCVEMVVAGGVKMSAGSDGKVAWRQTPWQEAHASRGPPRPLRRCIQGLD 224
Query: 238 PMLTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTG 297
P TA LF+ A +GER VDG+DCFVL+V+A+ ++LRAR+S VE++RH V GYFSQRTG
Sbjct: 225 PKSTADLFSSAAWVGERCVDGDDCFVLRVDADHAALRARSSGDVEVVRHAVLGYFSQRTG 284
Query: 298 LLVQLEDSHLLQI--KSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRF--- 352
LLV+LEDSHLL+I + S +WETTMES + DYRAVDG+NIAHAGRTAVSL RF
Sbjct: 285 LLVRLEDSHLLRIGLAHAAAESAYWETTMESSIGDYRAVDGINIAHAGRTAVSLSRFESA 344
Query: 353 --------GDSSDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDL 391
G + T MEE W+IEEVDFN+ GLSMDCFLPP DL
Sbjct: 345 DDAAAAARGSNKRSWGTTTMEETWSIEEVDFNVVGLSMDCFLPPRDL 391
>Os03g0606100 Protein of unknown function DUF620 family protein
Length = 792
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/325 (49%), Positives = 214/325 (65%), Gaps = 15/325 (4%)
Query: 69 RGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQYIAASGGEW 128
R +L+L+LGV+GAPL P+ V A+ P +K PIE+S+A+YI+QQY+AASGG+
Sbjct: 268 RNDLRLLLGVMGAPLAPVHVSAAEPLPHL----SIKDTPIETSSAQYILQQYLAASGGQK 323
Query: 129 ALNKVTNMYAMGKVRMTAAELNSSDADXXXXXXXXXXXXXXXXXXXXXXXXFVLWQKKPE 188
L V N Y MGKVRM A E ++ FVLWQ PE
Sbjct: 324 LLASVRNAYTMGKVRMVATEFETAG----------RLVKNRNAARCAEPGRFVLWQMAPE 373
Query: 189 LWSLELVVSGCKISAGSDGKVAWRQTPWHQSHAXXXXXXXXXXXXXXXDPMLTASLFADA 248
+W +EL V G K+ AG +GK+ WR TPW +HA DP+ TAS+FA A
Sbjct: 374 MWYIELAVGGSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPLTTASMFAGA 433
Query: 249 VCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTGLLVQLEDSHLL 308
CIGER V+GEDCF+LK+ E +L+AR+ EIIRH ++GYFSQRTGLLV +EDSHL
Sbjct: 434 RCIGERKVNGEDCFILKLCTEPETLKARSEGLAEIIRHVMFGYFSQRTGLLVHIEDSHLT 493
Query: 309 QIKSSGHG-SVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFGDSSDGNTRTRMEEV 367
+I+S+ G +V+WETT+ S + DYR V+G+ IAH+GR+AV+L RFG+ + +T+TRMEE
Sbjct: 494 RIQSTTGGDAVYWETTINSFIEDYRPVEGIMIAHSGRSAVTLFRFGEVAMSHTKTRMEEA 553
Query: 368 WNIEEVDFNIWGLSMDCFLPPSDLK 392
W+IEEV FN+ GLSMDCF+PP+D+K
Sbjct: 554 WSIEEVAFNVPGLSMDCFIPPTDIK 578
>Os03g0167400 Protein of unknown function DUF620 family protein
Length = 366
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 29/340 (8%)
Query: 60 GAGEPCSMSRGELQLMLGVIGAPLIPLPVDHAKQSPCSVLCEQLKADPIESSTAKYIIQQ 119
GAGE + +L+++L V+ PL P+P+ + P V +S+A+YII+Q
Sbjct: 43 GAGEDARPA-ADLRVLLSVLACPLSPVPI--LPRLPRHV-----------ASSAQYIIEQ 88
Query: 120 YIAASGGEWALNKVTNMYAMGKVRMTAAELNSSDADXXXXXXXXXXXXXXXXXXXXXXXX 179
+ A +G V +MYA G+VR+ +
Sbjct: 89 FRATTGCGKIEGAVKSMYAAGRVRLAMLQ-----------DPAGGGAGGGGGGGRGHEGS 137
Query: 180 FVLWQKKPELWSLELVVSGCKISAGSDGKVAWRQTPWHQSHAXXXXXXXXXXXXXXXDPM 239
FV+WQ P +W +E+ V+G ++AGSDG+VAWR+TPW +HA DP+
Sbjct: 138 FVMWQLAPSMWIVEMAVAGQHVAAGSDGRVAWRRTPWVGAHAARGGSRPLRRALQGLDPV 197
Query: 240 LTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRTGLL 299
A++F+ A GE+ VDGEDCFVL+++ S L + + + E+IRH + G+FSQR+GLL
Sbjct: 198 TIAAIFSTAEHAGEKLVDGEDCFVLRLDVGPSVLSSWSDGTAEVIRHGLTGFFSQRSGLL 257
Query: 300 VQLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVD---GVNIAHAGRTAVSLVRFG-DS 355
V+LEDS L +I+S G +++WETT+ S L DYRAVD GV++AH+GR+ L RFG
Sbjct: 258 VRLEDSQLTRIQSPGAAAMYWETTISSSLADYRAVDGGGGVHVAHSGRSTAHLARFGVGV 317
Query: 356 SDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLKDSK 395
TRMEE W I++V FN+ GL D F+PP +++ S+
Sbjct: 318 RAARVVTRMEESWTIDDVAFNVPGLGPDAFIPPEEVRRSR 357
>Os07g0591100 Protein of unknown function DUF620 family protein
Length = 380
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 91/157 (57%), Positives = 127/157 (80%), Gaps = 1/157 (0%)
Query: 237 DPMLTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRT 296
DP+ TA LFA+A C+GE+ V+GEDCF+LK+ A+ +L+ R+ EIIRH ++GYFSQRT
Sbjct: 166 DPLTTAGLFAEARCVGEKKVNGEDCFILKLSADPQTLKQRSEGPAEIIRHVLFGYFSQRT 225
Query: 297 GLLVQLEDSHLLQIKS-SGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFGDS 355
GL+V +EDSHL +I+ SG +V+WETT+ S L DYR V+G+ IAHAGR+AV+L RFG++
Sbjct: 226 GLIVHIEDSHLTRIQPHSGGDAVYWETTISSALEDYRPVEGIMIAHAGRSAVTLFRFGEA 285
Query: 356 SDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLK 392
+ +T+TRMEE W+IEEV FN+ GLS+DCF+PP+D++
Sbjct: 286 AMSHTKTRMEEAWSIEEVAFNVPGLSVDCFIPPADIR 322
>Os10g0411000
Length = 220
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 237 DPMLTASLFADAVCIGERSVDGEDCFVLKVEAEASSLRARNSSSVEIIRHTVWGYFSQRT 296
DP+ AS+F+ A +GE++VDGEDCF L+++ S L A + E+IRH + GYFSQR+
Sbjct: 41 DPVTIASVFSAAEHVGEKAVDGEDCFALRLDVAPSVLSAWGDGAAEVIRHGMTGYFSQRS 100
Query: 297 GLLVQLEDSHLLQIKSSGHGSVFWETTMESHLHDYRAVDGVNIAHAGRTAVSLVRFG-DS 355
GLL +L+DS L +I++ G +++WETT+ S L DYRA DG +AHAG + L RFG D
Sbjct: 101 GLLARLDDSQLTRIQTPGAPAMYWETTVSSRLGDYRAADGAVVAHAGTSVAHLARFGADV 160
Query: 356 SDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDL 391
TRMEE W I++V FN+ GL + F+ P ++
Sbjct: 161 GAARAVTRMEEAWTIDDVAFNVAGLCPESFIAPEEV 196
>Os12g0581300 Protein of unknown function DUF620 family protein
Length = 158
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 91/109 (83%), Gaps = 1/109 (0%)
Query: 285 RHTVWGYFSQRTGLLVQLEDSHLLQIKSSGHG-SVFWETTMESHLHDYRAVDGVNIAHAG 343
RH ++GYFSQ+TGLLV LEDSHL +I+S+ G +V+WETT+ S + DYR V+G+ +AHAG
Sbjct: 1 RHVLFGYFSQKTGLLVHLEDSHLTRIQSTTGGDAVYWETTINSFIEDYRPVEGIMVAHAG 60
Query: 344 RTAVSLVRFGDSSDGNTRTRMEEVWNIEEVDFNIWGLSMDCFLPPSDLK 392
R+AV+L RFG+ + +T+TRMEE W+IEEV FN+ GLS+DCF+PP+D+K
Sbjct: 61 RSAVTLFRFGEVAMSHTKTRMEEAWSIEEVAFNVPGLSIDCFIPPTDIK 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,056,401
Number of extensions: 463508
Number of successful extensions: 939
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 7
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)