BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0228400 Os03g0228400|AK103703
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0228400 Similar to Adapter-related protein complex 3 s... 340 2e-94
Os01g0353600 Clathrin adaptor complex, small chain family p... 176 8e-45
Os03g0811300 Similar to Clathrin assembly small subunit pro... 113 8e-26
Os03g0783700 Similar to Clathrin assembly small subunit pro... 112 1e-25
Os12g0207300 Similar to Clathrin coat assembly protein AP17... 107 5e-24
Os10g0368400 Similar to Adapter-related protein complex 4 s... 100 4e-22
Os08g0395300 Clathrin adaptor complex, small chain family p... 65 2e-11
>Os03g0228400 Similar to Adapter-related protein complex 3 sigma 2 subunit
(Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit)
(Sigma-3B-adaptin)
Length = 166
Score = 340 bits (873), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA
Sbjct: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD
Sbjct: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
Query: 121 EMILGGQVIETSSEQIMRSVEEIARLEKQSNTTSLIPKSISERFSR 166
EMILGGQVIETSSEQIMRSVEEIARLEKQSNTTSLIPKSISERFSR
Sbjct: 121 EMILGGQVIETSSEQIMRSVEEIARLEKQSNTTSLIPKSISERFSR 166
>Os01g0353600 Clathrin adaptor complex, small chain family protein
Length = 239
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/96 (87%), Positives = 87/96 (90%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MIQAVMVMSTQGKPRLLKFYSY PEKHQ+LVR VFQLLSARPDSVSNFVKVDAIFGPGA
Sbjct: 1 MIQAVMVMSTQGKPRLLKFYSYHAPEKHQELVRAVFQLLSARPDSVSNFVKVDAIFGPGA 60
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETL 96
KL+YKHLATLY FVFD SENELAVLDLVQV V +
Sbjct: 61 KLIYKHLATLYLGFVFDGSENELAVLDLVQVKVPQI 96
>Os03g0811300 Similar to Clathrin assembly small subunit protein AP19 (Clathrin
assembly protein AP19, small subunit)
Length = 169
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 89/138 (64%), Gaps = 5/138 (3%)
Query: 1 MIQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGA 60
MI V+++S QGK RL K+Y+ P ++ +++ V L+ R + NFV G
Sbjct: 9 MIHFVLLISRQGKVRLTKWYNPYPQKERSKVIKEVSTLVLTRGPKMCNFVDWH-----GY 63
Query: 61 KLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILD 120
++VYK A+LYF D+++NEL L ++ FVE LDR F NVCELD++FNF+K + ILD
Sbjct: 64 RVVYKRYASLYFCMCIDAADNELETLQIIHHFVEILDRYFGNVCELDLIFNFHKAYFILD 123
Query: 121 EMILGGQVIETSSEQIMR 138
E+++ G++ E++ + ++R
Sbjct: 124 EVLIAGELQESNKKAVLR 141
>Os03g0783700 Similar to Clathrin assembly small subunit protein AP19 (Clathrin
assembly protein AP19, small subunit)
Length = 182
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 103/164 (62%), Gaps = 12/164 (7%)
Query: 2 IQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAK 61
I V+++S QGK RL K+YS ++ ++R + L+ R + NFV+ G K
Sbjct: 23 INFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVE-----WKGYK 77
Query: 62 LVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILDE 121
+VY+ A+LYF D+ +NEL VL+++ FVE LDR F +VCELD++FNF+K + ILDE
Sbjct: 78 VVYRRYASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDE 137
Query: 122 MILGGQVIETSSEQIMR------SVEEIARLEKQSNTTSLIPKS 159
+++ G++ E+S + + R S+ E A+ E+ S+ +++I ++
Sbjct: 138 ILIAGELQESSKKNVARLIAAQDSLVEAAK-EEASSISNIIAQA 180
>Os12g0207300 Similar to Clathrin coat assembly protein AP17 (Clathrin coat
associated protein AP17) (Plasma membrane adaptor AP-2
17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly
protein 2 small chain)
Length = 142
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
Query: 1 MIQAVMVMSTQGKPRLLKFY-SYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPG 59
MI+ +++ + QGK RL K+Y + EKH+ + V +L+ R +NFV+
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHK-VEYEVHRLVVNRDPKFTNFVEFRT----- 54
Query: 60 AKLVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTIL 119
K++Y+ A L+F D ++NELA L+ + +FVE LD F NVCELD+VFNF+K++ IL
Sbjct: 55 HKVIYRRYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
Query: 120 DEMILGGQVIETSSEQIMRSVEEIARLE 147
DE IL G++ ETS I+ + E+ +LE
Sbjct: 115 DEFILAGELQETSKRAIIERMGELEKLE 142
>Os10g0368400 Similar to Adapter-related protein complex 4 sigma 1 subunit (Sigma
subunit of AP-4) (AP-4 adapter complex sigma subunit)
Length = 143
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 88/136 (64%), Gaps = 5/136 (3%)
Query: 2 IQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAK 61
I+ V++++ QG+ R+ ++Y + ++ + L + + AR D +FV+ K
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEHLSVDERRALEGEIVRKCLARTDHQCSFVE-----HRNYK 57
Query: 62 LVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKLHTILDE 121
+VY+ A+L+F+ D+ ENELA+L+ + + VET+DR F NVCELDI+F+ K+H +L+E
Sbjct: 58 VVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEE 117
Query: 122 MILGGQVIETSSEQIM 137
M++ G ++ETS + I+
Sbjct: 118 MVMNGCIVETSKQNIL 133
>Os08g0395300 Clathrin adaptor complex, small chain family protein
Length = 100
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 2 IQAVMVMSTQGKPRLLKFYSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAK 61
I+ V+ ++ QG+ RL ++Y + ++ + L + + AR D +FV+ K
Sbjct: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVE-----HRNYK 57
Query: 62 LVYKHLATLYFVFVFDSSENELAVLDLVQVFVETLDRCFKNV 103
+VY+ A+L+F+ D+ ENELA+L+ + +FVET+DR F NV
Sbjct: 58 VVYRRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,735,994
Number of extensions: 160770
Number of successful extensions: 445
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 7
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)