BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0215200 Os03g0215200|AB106553
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0215200 Drooping leaf protein 400 e-112
Os04g0536300 Similar to Yabby15 protein (Fragment) 127 7e-30
Os03g0650000 Similar to Yabby9 protein 126 1e-29
Os12g0621100 Similar to Filamentous flower-like yabby prote... 125 3e-29
Os02g0643200 YABBY protein family protein 120 5e-28
Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower pro... 120 6e-28
Os10g0508300 YABBY protein family protein 98 3e-21
>Os03g0215200 Drooping leaf protein
Length = 194
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
Query: 61 TDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEI 120
TDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEI
Sbjct: 61 TDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEI 120
Query: 121 QRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSNPEPRVVAAPIPHQERANEQV 180
QRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSNPEPRVVAAPIPHQERANEQV
Sbjct: 121 QRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSNPEPRVVAAPIPHQERANEQV 180
Query: 181 VESFDIFKQMERSG 194
VESFDIFKQMERSG
Sbjct: 181 VESFDIFKQMERSG 194
>Os04g0536300 Similar to Yabby15 protein (Fragment)
Length = 266
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 95/185 (51%), Gaps = 44/185 (23%)
Query: 4 VSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRP----------- 52
++ E LCYV C +C+T+LAVGVPC L TVTV+CGHC NL ++ R
Sbjct: 25 LAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTAN 84
Query: 53 --PMVQPLSPTDHPLG------PFQGPCT------------------DCRRNQPLPLVSP 86
P Q L P G FQ P + C N P ++
Sbjct: 85 QLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMAS 144
Query: 87 TSNEGSPR-------APFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMA 139
+N+ + R AP + EK+ R+PSAYNRF+++EIQRIKA+ PDI HREAFS A
Sbjct: 145 AANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAA 204
Query: 140 AKNWA 144
AKNWA
Sbjct: 205 AKNWA 209
>Os03g0650000 Similar to Yabby9 protein
Length = 186
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTDHPLGP 67
EH+CYV C +CNT+ AV VP +++ VTV+CGHC +L ++ R +VQ L DH
Sbjct: 10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRG-LVQALPAEDHLQDN 68
Query: 68 FQGPCTDCRRNQPLPLVSPTSNEGSPRAPFV-----------VKPPEKKHRLPSAYNRFM 116
+ R N S+ R P + V+PPEK+ R+PSAYNRF+
Sbjct: 69 LKMHNMSFRENYS----EYGSSSRYGRVPMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFI 124
Query: 117 REEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSNPEPRVVAAPIPHQ 173
+EEI+RIKA PDI HREAFS AAKNWA S +S + AP P +
Sbjct: 125 KEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSKKLDEAIGAPSPQK 181
>Os12g0621100 Similar to Filamentous flower-like yabby protein (Fragment)
Length = 207
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 101/191 (52%), Gaps = 24/191 (12%)
Query: 4 VSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTDH 63
++P+E +CYV C +CNT+LAV VP +++ VTV+CGHC NL ++ R M + DH
Sbjct: 5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH 64
Query: 64 PLGPFQ-GPCTDCRRNQP-----------------LP-----LVSPTSNEGSPRAPFVVK 100
Q + C R+Q LP +VS + +
Sbjct: 65 HHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHAR 124
Query: 101 PPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSN 160
PPEK+ R+PSAYNRF++EEI+RIKA PDI HREAFS AAKNWA P +S +
Sbjct: 125 PPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHY-PNIHFGLSPGHEG 183
Query: 161 PEPRVVAAPIP 171
+ V PIP
Sbjct: 184 GKKLVDVDPIP 194
>Os02g0643200 YABBY protein family protein
Length = 256
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 96/188 (51%), Gaps = 52/188 (27%)
Query: 5 SPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPR------------- 51
SP+E LCYV C C+T+LAVGVPC L TVTV+CGHC NL ++ R
Sbjct: 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAN 79
Query: 52 -----PPMVQPLSPTDHPL---GPFQGPC-------------------TDCRRNQP---L 81
P ++ P SP H L FQ P + C N P +
Sbjct: 80 QLHFGPSLLSPTSP--HGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQM 137
Query: 82 PLVSPTSNEGSPRAP-----FVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAF 136
P P E P P +PPEK+ R+PSAYNRF+++EIQRIKA PDI HREAF
Sbjct: 138 PPAKPVQQE--PELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAF 195
Query: 137 SMAAKNWA 144
S AAKNWA
Sbjct: 196 SAAAKNWA 203
>Os07g0160100 YABBY protein (OsYAB1) (Filamentous flower protein 1)
Length = 169
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 87/154 (56%), Gaps = 16/154 (10%)
Query: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
M + SEH+CYV C YCNT+L V VP + VTV+CGHC + P Q +
Sbjct: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCT-MVLSMDLAPFHQARTV 59
Query: 61 TDHPL------GPFQGPCTDCRRNQPLPLVS---PTSNEG-SPRAPFVVKPPEKKHRLPS 110
DH + G G RNQ PTS + SP ++PPEK+ R+PS
Sbjct: 60 QDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSP-----IRPPEKRQRVPS 114
Query: 111 AYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
AYNRF++EEIQRIK + P+I HREAFS AAKNWA
Sbjct: 115 AYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWA 148
>Os10g0508300 YABBY protein family protein
Length = 348
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 91/239 (38%), Gaps = 99/239 (41%)
Query: 5 SPSEHLCYVRCTYCNTVLAVG-----------------------------------VPCK 29
S E LCYV C YC+TVL V VP
Sbjct: 55 SEQEQLCYVHCHYCDTVLVVSDLRSNHAHFLSICVHLALDSRAFLVHPWRRVLQVSVPSS 114
Query: 30 RLMDTVTVKCGHCNNLSFLSPR-------------------------------------- 51
L +TVTV+CGHC++L ++ R
Sbjct: 115 SLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPA 174
Query: 52 -PPMVQPL--------SPTD-----HPLGPFQGPCTDCRRNQPLPLV----------SPT 87
PP L SPT H LG CR N
Sbjct: 175 NPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAA 234
Query: 88 SNEGSPRAPFVV--KPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
+ E SPR V +PPEK+ R+PSAYNRF+++EIQRIKA PDI HREAFS AAKNWA
Sbjct: 235 AKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 293
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,142,067
Number of extensions: 390634
Number of successful extensions: 1519
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1515
Number of HSP's successfully gapped: 7
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)