BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0214100 Os03g0214100|AF009179
(630 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0214100 Replication protein A1 1254 0.0
Os02g0776800 Replication protein A 70kDa 285 7e-77
Os05g0111000 Similar to Gag polyprotein [Contains: Core pro... 280 3e-75
Os08g0333300 93 7e-19
Os07g0651500 Protein of unknown function DUF889, eukaryote ... 92 9e-19
Os07g0113000 Protein of unknown function DUF889, eukaryote ... 89 7e-18
Os05g0110950 84 3e-16
Os11g0243100 83 5e-16
Os11g0625600 83 6e-16
Os01g0838100 Nucleic acid-binding, OB-fold domain containin... 83 8e-16
Os10g0194001 75 1e-13
Os04g0362550 73 7e-13
Os11g0475900 72 1e-12
Os12g0454300 Protein of unknown function DUF889, eukaryote ... 68 2e-11
>Os03g0214100 Replication protein A1
Length = 630
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/630 (96%), Positives = 609/630 (96%)
Query: 1 MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK 60
MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK
Sbjct: 1 MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK 60
Query: 61 TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA 120
TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA
Sbjct: 61 TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA 120
Query: 121 EKQEEKPAILLSPKEESVVLSKPTNAXXXXXXXXXXXQEVKSASQIVNEQRGNAAPAARL 180
EKQEEKPAILLSPKEESVVLSKPTNA QEVKSASQIVNEQRGNAAPAARL
Sbjct: 121 EKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARL 180
Query: 181 AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM 240
AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM
Sbjct: 181 AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM 240
Query: 241 FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLXXXXXXXXXXGETFIPQ 300
FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTL GETFIPQ
Sbjct: 241 FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQ 300
Query: 301 IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV 360
IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV
Sbjct: 301 IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV 360
Query: 361 TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ 420
TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ
Sbjct: 361 TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ 420
Query: 421 LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA 480
LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA
Sbjct: 421 LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA 480
Query: 481 YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA 540
YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA
Sbjct: 481 YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA 540
Query: 541 WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR 600
WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR
Sbjct: 541 WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR 600
Query: 601 QRITVRSEAPVDHAAEAKYMLEEIAKLTGC 630
QRITVRSEAPVDHAAEAKYMLEEIAKLTGC
Sbjct: 601 QRITVRSEAPVDHAAEAKYMLEEIAKLTGC 630
>Os02g0776800 Replication protein A 70kDa
Length = 656
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 196/666 (29%), Positives = 335/666 (50%), Gaps = 68/666 (10%)
Query: 13 AVAFVLENASPDAATGVPVPEIVLQVVDLKPI---------GTRFTFLASDGKDKIKTML 63
A+A + N A G + VLQ+V+L+ + G RF + SDG +
Sbjct: 2 AMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALF 61
Query: 64 LTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEAEKQ 123
QL+ RSG ++ ++++ +Y N +G + ++++I LEV+ + EI
Sbjct: 62 AAQLSDHARSGALRRGSIVQLSEYVINEVGPR--RIIVILNLEVLVS--ECEIIGNPTAL 117
Query: 124 EEKPAILLSPKEESVVLSKPTNAXXXXXXXXXXXQEVKSASQIVNEQRGNAA-------- 175
E + + +P P + + N GN++
Sbjct: 118 SETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSD 177
Query: 176 ----------PAARLAMTRRVH-------------PLISLNPYQGNWIIKVRVTSKGNLR 212
P+ R A + H P+ +LNPYQG W IK RVT+KG++R
Sbjct: 178 KVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIR 237
Query: 213 TYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQF 272
Y NA+G+G VF+ +L D DG +I+ T FN +FY + E+GKVY +S+G+LR A K +
Sbjct: 238 RYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNY 297
Query: 273 KTVHNDYEMTLXXXXXXXXXXGE-TFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVS 331
++N++E+ L E + IP +++F I+++ ++D+IGVV SV+
Sbjct: 298 NHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEI-EDAQNNAILDIIGVVTSVN 356
Query: 332 PTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSA--PIIAIK 389
P +++RK ET KR + + D S ++V +++W D G +L MV+ P++A+K
Sbjct: 357 PCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVK 415
Query: 390 SLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDM--GASRVG 447
+ KVSDF G S+ T+ + + +NPD EA LR W+DS G+ S SI D+ GASR
Sbjct: 416 AGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASR-- 473
Query: 448 GARSMYSDRVFLSHITSDPNLGQ-DKPVFFSLNAYISLIKPDQTMWYRAC------KTCN 500
R ++ I D LG DKP + ++ A + K +++ +Y AC + CN
Sbjct: 474 -----NEIRKTVAQI-KDEGLGMGDKPDWITVKATVIFFK-NESFFYTACPNMIGDRQCN 526
Query: 501 KKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADEL 560
KKVT++ + C+ C + EC RY++ ++ D +G AW++ F + + ++GCSA EL
Sbjct: 527 KKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATEL 586
Query: 561 DRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYM 620
+ +++ E D + + + +L R+ V + Y +E++ + T VD + E+K++
Sbjct: 587 NALKERE-DPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFL 645
Query: 621 LEEIAK 626
L+ I+K
Sbjct: 646 LDLISK 651
>Os05g0111000 Similar to Gag polyprotein [Contains: Core protein p15 (Matrix
protein)
Length = 951
Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 167/469 (35%), Positives = 262/469 (55%), Gaps = 25/469 (5%)
Query: 173 NAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD 232
N PA+R R+ P+ +LNPYQ W IK RVT+K ++R + NAR G VF+ +L D
Sbjct: 294 NRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQ 353
Query: 233 GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLXXXXXXXXX 292
G +I+A + E+A KF+ E+G+VY IS+GSL+ A K++ T+++DYE+TL
Sbjct: 354 GGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEV 413
Query: 293 XG--ETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDI 350
+ IP++QYNF +I +L + +VD++GVV SVSP+ ++ RKI ET KR I
Sbjct: 414 CSDDDNSIPRLQYNFRQISEL-ENMANETIVDLLGVVTSVSPSATIMRKIGTETR-KRSI 471
Query: 351 VVADDSSKTVTISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRST 408
+ D S +++ ++LW + GQ+L DS PIIA K +V DF G S+ST+G +
Sbjct: 472 QLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQ 531
Query: 409 IVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNL 468
+++NPD PE E+LR WY +EGK S+ +M + R+ R ++ I D NL
Sbjct: 532 LIINPDFPEVERLRQWYMTEGKTAPCISLSREM----LNMGRT--DARKTIAQI-KDENL 584
Query: 469 GQ-DKPVFFSLNAYISLIKPDQTMWYRAC-------KTCNKKVTEAIGSGYW-CEGCQKN 519
G+ +KP + ++ A IS + ++ Y AC + CNKK G G W C+ C ++
Sbjct: 585 GRLEKPDWITVKAAISHVT-TESFCYPACPKLLPVGRQCNKKAINN-GDGMWHCDRCDES 642
Query: 520 DAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEA 579
RY++ ++ D TG + S F++ E+I G A EL IR + DD+ ++ E
Sbjct: 643 FQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEG 702
Query: 580 T-WVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKL 627
W +LF++ V + Y +E+ + T +D + E+ +L I L
Sbjct: 703 VRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAIDNL 751
>Os08g0333300
Length = 2183
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 161/389 (41%), Gaps = 49/389 (12%)
Query: 211 LRTYKNARGEGCVFNVELTDVD--GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVA 268
L + + G G +F+ +L +D G I A ++ A P+ + KVYYI ++R A
Sbjct: 1611 LWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVYYIDSFTVRYA 1670
Query: 269 NKQFKTVHNDYEMTLXXXXXXXXXXGETFI------PQIQYNFVK-------IDQLGPYV 315
N+ ++ V N + E +I P I ++ +D+ YV
Sbjct: 1671 NRTYRPVDNSLMIVFSKWTTF-----EEYIEPAADFPGITFSLTPFSDIPNLVDKTIFYV 1725
Query: 316 GGREL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLA----- 369
G + DV+GV+ V VR K N KR I + D S+ T+ ++LW + A
Sbjct: 1726 GLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERADAFDA 1785
Query: 370 ---TTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAEQLRAW 424
GQ A +I V D+ GL L+ G S +N D+PE +L+
Sbjct: 1786 NSVYNAGQT------QAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKES 1839
Query: 425 YDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISL 484
+ + + S D A+ G + ++ + +P+ +++ F +N +
Sbjct: 1840 FSANFRPVSWV----DNPAT--GYNQDTAEEKTIQEILALNPH--KNRSTRFIVNVTVRR 1891
Query: 485 IKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSL 544
I + + WY +C+ C + ++ GS Y C C N RY +V+ D + A L
Sbjct: 1892 ICSENSWWYNSCRLC-YRTSKPYGSSYKCSSCS-NIGIPDPRYKVVLIAGDASSNATFIL 1949
Query: 545 FNDQAERIVGCSADELDRIRKEEGDDSYL 573
F A R++ S + L I D Y+
Sbjct: 1950 FGRVAHRLIKKSVESL--IEDNPPDSDYI 1976
>Os07g0651500 Protein of unknown function DUF889, eukaryote family protein
Length = 2021
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 161/389 (41%), Gaps = 49/389 (12%)
Query: 211 LRTYKNARGEGCVFNVELTDVD--GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVA 268
L + + G G +F+ +L +D G I A ++ A P+ + KVYYI ++R A
Sbjct: 1648 LWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVYYIDSFTVRYA 1707
Query: 269 NKQFKTVHNDYEMTLXXXXXXXXXXGETFI------PQIQYNFVK-------IDQLGPYV 315
N+ ++ V N + E +I P I ++ +D+ YV
Sbjct: 1708 NRTYRPVDNSLMIVFSKWTTF-----EEYIEPAADFPGITFSLTPFSDIPNLVDKTIFYV 1762
Query: 316 GGREL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLA----- 369
G + DV+GV+ V VR K N KR I + D S+ T+ ++LW + A
Sbjct: 1763 GLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERADAFDA 1822
Query: 370 ---TTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAEQLRAW 424
GQ A +I V D+ GL L+ G S +N D+PE +L+
Sbjct: 1823 NSVYNAGQT------QAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKES 1876
Query: 425 YDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISL 484
+ + + S D A+ G + ++ + +P+ +++ F +N +
Sbjct: 1877 FSANFRPVSWV----DNPAT--GYNQDTAEEKTIQEILALNPH--KNRSTRFIVNVTVRR 1928
Query: 485 IKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSL 544
I + + WY +C+ C + ++ GS Y C C N RY +V+ D + A L
Sbjct: 1929 ICSENSWWYNSCRLC-YRTSKPYGSSYKCSSCS-NIGIPDPRYKVVLIAGDASSNATFIL 1986
Query: 545 FNDQAERIVGCSADELDRIRKEEGDDSYL 573
F A R++ S + L I D Y+
Sbjct: 1987 FGRVAHRLIKKSVESL--IEDNPPDSDYI 2013
>Os07g0113000 Protein of unknown function DUF889, eukaryote family protein
Length = 1790
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 144/341 (42%), Gaps = 28/341 (8%)
Query: 223 VFNVELTDVD--GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYE 280
+++++L VD G I A +F + F P+ GKVYY+ ++ +NK ++ V N
Sbjct: 1256 IYHIDLVLVDEKGGSIHAQIFPPLLQVFKPLLTEGKVYYLDSYRVKTSNKSYRPVANPLM 1315
Query: 281 MTLXXXXXXXXXXGETF-IPQIQYNFVKIDQLGPYVGGRE-LVDVIGVVQSVSPTLSVRR 338
MT F P + Y ++++ +V E VDVIG + +S +R
Sbjct: 1316 MTFTKWTSVEQCLDVPFNFPTVVYTLTPLNEVSNFVDKNESFVDVIGFITEISTPTMLRP 1375
Query: 339 KIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKV---SD 395
K + + KR I + D ++ T+ +SLW + A E + ++ S ++
Sbjct: 1376 KSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDAESIHKAGQRLALSRGSACKWIGAN 1435
Query: 396 FQGLSLSTVGRSTIV-VNPDLPEAEQLRAW--YDSEGKGTSMASIGSDMGASRVGGARSM 452
FQ + L + I N D +L + + T++A +D
Sbjct: 1436 FQPIKLLQAPTTNIADENADDKTVRELLDMNPHKNRAPATNIADENAD------------ 1483
Query: 453 YSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYW 512
D+ + +P+ +++ F N I I D + WY +C+ C +V + G Y
Sbjct: 1484 --DKTVRELLDMNPH--KNRRTRFQANVTIRKICNDSSWWYNSCEKC-LRVVKPFGYTYK 1538
Query: 513 CEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIV 553
C GC N A RY + + D T +A LF A+RIV
Sbjct: 1539 CTGCY-NIAMAVPRYKLSVLAGDDTADAVFILFGKIAQRIV 1578
>Os05g0110950
Length = 193
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 188 PLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKK 247
P+ +L+PY+ W IK RVT+K L+ N RGE F+ +L D G ++ A F+ AA+K
Sbjct: 72 PIAALSPYKCKWTIKARVTAKSGLQHLSNDRGEAKFFDFDLLDEQGGEMLAKCFSSAAEK 131
Query: 248 FYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTL 283
FY + E+ KVY IS+G ++ A + F ++DYE+ L
Sbjct: 132 FYGLIEVDKVYLISRGLVKPAQEPF---NSDYELAL 164
>Os11g0243100
Length = 2171
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 156/386 (40%), Gaps = 47/386 (12%)
Query: 211 LRTYKNARGEGCVFNVELTDVD--GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRV- 267
L + + G G +F+ +L +D G I A ++ A P+ + KVYYI ++R
Sbjct: 1603 LWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVYYIDSFTVRTY 1662
Query: 268 --ANKQFKTVHNDYEMTLXXXXXXXXXXGETF-------IPQIQYNFVKIDQLGPYVGGR 318
+ V + + G TF IP + +D+ YVG
Sbjct: 1663 RPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNL------VDKTIFYVGLY 1716
Query: 319 EL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLA-------- 369
+ DV+GV+ V VR K N KR I + D S+ T+ ++LW + A
Sbjct: 1717 GMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERADAFDANSV 1776
Query: 370 TTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAEQLRAWYDS 427
GQ A +I V D+ GL L+ G S +N D+PE +L+ + +
Sbjct: 1777 YNAGQT------QAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKESFSA 1830
Query: 428 EGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKP 487
+ S D A+ G + ++ + +P+ +++ F +N + I
Sbjct: 1831 NFRPVSWV----DNPAT--GYNQDTAEEKTIQEILALNPH--KNRSTRFIVNVTVRRICS 1882
Query: 488 DQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFND 547
+ + WY +C+ C + ++ GS Y C C N RY +V+ D + A LF
Sbjct: 1883 ENSWWYNSCRLC-YRTSKPYGSSYKCSSCS-NIGIPDPRYKVVLIAGDASSNATFILFGR 1940
Query: 548 QAERIVGCSADELDRIRKEEGDDSYL 573
A R++ S + L I D Y+
Sbjct: 1941 VAHRLIKKSVESL--IEDNPPDSDYI 1964
>Os11g0625600
Length = 2171
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 156/386 (40%), Gaps = 47/386 (12%)
Query: 211 LRTYKNARGEGCVFNVELTDVD--GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRV- 267
L + + G G +F+ +L +D G I A ++ A P+ + KVYYI ++R
Sbjct: 1603 LWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVYYIDSFTVRTY 1662
Query: 268 --ANKQFKTVHNDYEMTLXXXXXXXXXXGETF-------IPQIQYNFVKIDQLGPYVGGR 318
+ V + + G TF IP + +D+ YVG
Sbjct: 1663 RPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNL------VDKTIFYVGLY 1716
Query: 319 EL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLA-------- 369
+ DV+GV+ V VR K N KR I + D S+ T+ ++LW + A
Sbjct: 1717 GMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERADAFDANSV 1776
Query: 370 TTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAEQLRAWYDS 427
GQ A +I V D+ GL L+ G S +N D+PE +L+ + +
Sbjct: 1777 YNAGQT------QAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKESFSA 1830
Query: 428 EGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKP 487
+ S D A+ G + ++ + +P+ +++ F +N + I
Sbjct: 1831 NFRPISWV----DNPAT--GYNQDTAEEKTIQEILALNPH--KNRSTRFIVNVTVRRICS 1882
Query: 488 DQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFND 547
+ + WY +C+ C + ++ GS Y C C N RY +V+ D + A LF
Sbjct: 1883 ENSWWYNSCRLC-YRTSKPYGSSYKCSSCS-NIGIPDPRYKVVLIAGDASSNATFILFGR 1940
Query: 548 QAERIVGCSADELDRIRKEEGDDSYL 573
A R++ S + L I D Y+
Sbjct: 1941 VAHRLIKKSVESL--IEDNPPDSDYI 1964
>Os01g0838100 Nucleic acid-binding, OB-fold domain containing protein
Length = 474
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 171/421 (40%), Gaps = 26/421 (6%)
Query: 189 LISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD--GTQIQATMFNEAAK 246
L ++P W I+ ++ + Y + +V+L +D G + A + A
Sbjct: 45 LCDISPASRGWKIRAKI---ARMWDYTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVEAD 101
Query: 247 KFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLXXXXXXXXXXG-ETFIPQIQYNF 305
KF P+ + KVY SK + + +K N Y + L P +N
Sbjct: 102 KFRPLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNL 161
Query: 306 VKIDQLGPYVGGRE-LVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISL 364
V+ L VG +E DVIG++ VS VR PKR I + D ++ V + L
Sbjct: 162 VQFSYLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVL 221
Query: 365 WNDLATTTGQELLDMV--DSAPI-IAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQL 421
W + A + + V D+A + I + +L + +LS +N D+PE Q
Sbjct: 222 WGEHAPDFDADAVHSVGQDNAVVGIFVDTLMKAYNNEETLSGGSACKWYLNEDIPEINQF 281
Query: 422 RAWYDSEGKGT---SMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSL 478
+DS G S G++ S AR + L I DP + FS
Sbjct: 282 ---FDSLGDSAPKIQWISTGAESFGSSQRPARLEHKSVADLKKI--DP--WEAAGAGFSC 334
Query: 479 NAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWC-EGCQKNDAECSLRYIMVIKVSDPT 537
I+ + P Q+ W+ +C C++ T A GS Y C GC A +Y + + +D T
Sbjct: 335 TVTIAKLSPSQSWWFSSCSRCHRAAT-AYGSSYKCSSGCSSVTA--IPKYRLCLIGTDGT 391
Query: 538 GEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMN 597
A LF A+++VG ++ I+ + D+ ++ F VSVT+ M+
Sbjct: 392 NSAEFVLFGRVAQQVVGRPV--MNLIKFQGRSDNIPKEIAAVVSQKFTFAVSVTERSLMH 449
Query: 598 E 598
Sbjct: 450 R 450
>Os10g0194001
Length = 495
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 41/374 (10%)
Query: 187 HPLIS-LNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD--GTQIQATMFNE 243
H LIS L+ N I RV+ L + + + +F+ +L +D GT I A ++
Sbjct: 3 HVLISQLSFGDSNKRIHARVS---RLWNFTDLNDDTKIFHTDLVLLDEIGTSIHAQIYPP 59
Query: 244 AAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLXXXXXXXXXXG-ETFIPQIQ 302
+K P+ + KVYYI ++R AN+ ++ V N+ + P I
Sbjct: 60 ITEKMKPLLKEEKVYYIDSFTIRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPSIT 119
Query: 303 YNFVKIDQLGPYVGGREL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVT 361
++ + + V VD++GV+ V ++R K N KR + + D S+
Sbjct: 120 FSLTPFEDVPSLVEKNSFYVDIMGVITEVGAVTTIRPKSRNAESLKRTLQIRDASA---- 175
Query: 362 ISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAE 419
GQ A ++ V D++GL L+ G S +N ++P+
Sbjct: 176 -----------GQT------QAQVVVFVGTLVKDYRGLGLTLTGSSPCKWYINLNIPKVA 218
Query: 420 QLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLN 479
+L +E T+ I + G + + ++ + +P+ + K F +N
Sbjct: 219 EL-----NESFSTNFQPIKW-VDEPATGYNQDVPEEKSTAEILNINPH--KHKGTRFIVN 270
Query: 480 AYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGE 539
+ I + + WY +C+ C K ++ GS Y C C N RY +V+ D
Sbjct: 271 VTVRRICNEYSCWYNSCRIC-YKTSKPYGSSYRCSSCS-NIGIPDPRYKVVLIAGDDDAN 328
Query: 540 AWLSLFNDQAERIV 553
A LF A+R++
Sbjct: 329 ATFILFGRIAQRLL 342
>Os04g0362550
Length = 1410
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 187 HPLIS-LNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQ--IQATMFNE 243
H +IS L P GN I VR++ N + + + + + +V L VD T+ I A +F
Sbjct: 633 HCIISKLEPGLGNPRIYVRLSRMWN---FNDPKDDISLLHVALVLVDETEGSIAAQIFPP 689
Query: 244 AAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLXX-XXXXXXXXGETFIPQIQ 302
K F P+ GK+YY++ +R ++ +K V N + T P
Sbjct: 690 DGKLFKPLLSEGKIYYLTHYIVRNCSRSYKPVSNSLAIAFTGWTIVEEYVNAPTSFPFYT 749
Query: 303 YNFVKIDQLGPYVGGRE-LVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVT 361
Y+ +QL + ++ D IGV+ VS SVR + + KR++ ++D ++ T+
Sbjct: 750 YSLKSFNQLTALLDNKDSFTDTIGVITEVSSITSVRSRTRDGDSLKRNVFISDANNATIR 809
Query: 362 ISLWNDLAT 370
+SLW D AT
Sbjct: 810 VSLWGDRAT 818
>Os11g0475900
Length = 1429
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 14/237 (5%)
Query: 321 VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQE-LLDM 379
VDV+GV+ V VR K N KR I + D S+ T+ ++LW D A + + +
Sbjct: 984 VDVMGVITEVGAPAIVRPKSRNTDSLKRTIQICDASNSTLPVTLWGDKAAIFDADTIYNA 1043
Query: 380 VDSAP-IIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAEQLRAWYDSEGKGTSMAS 436
+ P +I + V D+ GL L G S +N D+PE +L+ + + + +
Sbjct: 1044 GQTQPQVIVFVGMLVKDYPGLGLIVTGSSPCQWYLNLDIPEVLELKESFSANFRAIAWV- 1102
Query: 437 IGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYRAC 496
D A+ G + + ++ L + +P+ +++ F + + I + + WY +C
Sbjct: 1103 ---DNPAT--GYNQDIAEEKKILEILALNPH--KNRSTRFIVTVTVKKICTENSWWYNSC 1155
Query: 497 KTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIV 553
+ C + + GS Y C GC N RY +V+ D + +A LF A R++
Sbjct: 1156 RMC-YRTSRPYGSTYKCSGCS-NIGIPDPRYKVVLIAGDDSCDATFILFGRIAHRLI 1210
>Os12g0454300 Protein of unknown function DUF889, eukaryote family protein
Length = 1051
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 8/246 (3%)
Query: 187 HPLIS-LNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAA 245
H LIS L+ N IK RV+ + + R + ++ L D G I A M+
Sbjct: 538 HILISQLSCGDSNIRIKARVSRLWDFHDLNDDR-KIVHTDLVLLDETGNSIHAQMYQHVI 596
Query: 246 KKFYPMFELGKVYYISKGSLRVANKQFKTV-HNDYEMTLXXXXXXXXXXGETFIPQIQYN 304
P+ + GKVYYI ++R AN+ ++ V H+ + P I ++
Sbjct: 597 VNLKPLLQEGKVYYIDSFTVRYANRTYRPVAHSQMILFTKWTTLEECVDVPADFPAITFS 656
Query: 305 FVKIDQLGPYVGGREL-VDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTIS 363
+ V VD++GV+ + T +VR + N KR + + D S+ T+ ++
Sbjct: 657 LTPFGDVPSLVDKNIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLT 716
Query: 364 LWNDLATTTGQE-LLDMVDSAP-IIAIKSLKVSDFQGLSLSTVGRSTI--VVNPDLPEAE 419
LW + AT E + + P ++ V +++GL L+ G S +N ++PE
Sbjct: 717 LWGERATAFDAENIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINLEIPEVV 776
Query: 420 QLRAWY 425
+L+ Y
Sbjct: 777 ELKERY 782
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,314,772
Number of extensions: 765089
Number of successful extensions: 2022
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 2011
Number of HSP's successfully gapped: 14
Length of query: 630
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 523
Effective length of database: 11,448,903
Effective search space: 5987776269
Effective search space used: 5987776269
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)