Os12g0454300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF889, eukaryote family protein.
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Os12g0454300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF889, eukaryote family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 516.26 | 1.07 | 4.71 | -2.81 | 0.174 | -0.941 | -0.719 | -4.74 | 0.715 | 14.5 | 39.99 | 3723 | -- | -- |
| 525.02 | 1.07 | 4.66 | -2.61 | 0.264 | -1.02 | -0.709 | -- | 1 | 13.9 | 1.226e-05 | 10698 | -- | -- |
| 517.83 | 1.06 | 4.71 | -2.82 | 0.179 | -0.959 | -- | -4.86 | 0.71 | 13.5 | 41.13 | 3692 | -- | -- |
| 526.09 | 1.07 | 4.67 | -2.67 | 0.262 | -0.994 | -- | -- | 0.961 | 14.1 | -4.469 | 10698 | -- | -- |
| 519.71 | 1.06 | 4.71 | -2.83 | -- | -0.997 | -- | -4.93 | 0.71 | -- | 41.38 | 3692 | -- | -- |
| 553.86 | 1.1 | 4.73 | -2.5 | 0.252 | -- | -0.56 | -- | 0.708 | 13.9 | -- | -- | -- | -- |
| 554.79 | 1.1 | 4.73 | -2.52 | 0.256 | -- | -- | -- | 0.704 | 12.7 | -- | -- | -- | -- |
| 529.65 | 1.07 | 4.68 | -2.66 | -- | -0.929 | -- | -- | 0.93 | -- | -3.877 | 11256 | -- | -- |
| 705.01 | 1.24 | 4.62 | -- | 0.239 | -0.663 | -- | -- | 1.18 | 14 | -8.796 | 12721 | -- | -- |
| 558.9 | 1.1 | 4.73 | -2.53 | -- | -- | -- | -- | 0.699 | -- | -- | -- | -- | -- |
| 722.01 | 1.26 | 4.67 | -- | 0.297 | -- | -- | -- | 0.985 | 13.1 | -- | -- | -- | -- |
| 708.55 | 1.24 | 4.62 | -- | -- | -0.689 | -- | -- | 1.18 | -- | -5.722 | 12717 | -- | -- |
| 727.5 | 1.26 | 4.67 | -- | -- | -- | -- | -- | 0.98 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 507.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 2 | 507.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 3 | 507.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 4 | 507.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 508.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 6 | 508.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 16 |
| 9 | 508.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 10 | 508.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 11 | 508.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 12 | 508.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 16 | 508.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 17 | 508.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 17 |
| 18 | 508.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 19 | 508.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 20 | 508.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 23 | 508.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 24 | 508.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 17 |
| 25 | 508.57 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 32 | 508.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 33 | 508.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 51 | 508.75 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 57 | 508.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 63 | 508.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 64 | 508.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 65 | 508.90 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 3 | NA |
| 67 | 508.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 68 | 508.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 69 | 508.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 70 | 508.93 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 3 | NA |
| 71 | 508.93 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 3 | NA |
| 75 | 508.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 76 | 508.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 87 | 509.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 116 | 509.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 117 | 509.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 157 | 509.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 163 | 509.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 165 | 509.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 21 |
| 170 | 509.67 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 8 | NA |
| 178 | 509.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 19 |
| 203 | 509.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 221 | 509.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 16 |
| 228 | 510.03 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 9 | NA |
| 230 | 510.03 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 9 | NA |
| 231 | 510.03 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 260 | 510.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 261 | 510.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 286 | 510.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 287 | 510.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 316 | 510.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 13 |
| 322 | 510.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 324 | 510.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 327 | 510.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 392 | 510.68 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 423 | 510.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 456 | 510.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 466 | 511.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 467 | 511.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 528 | 511.40 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 561 | 511.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 569 | 511.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 570 | 511.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 603 | 511.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 604 | 511.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 612 | 512.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 614 | 512.05 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 674 | 512.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 675 | 512.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 678 | 512.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 717 | 512.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 749 | 512.82 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 888 | 513.31 | radiation | 40.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 907 | 513.41 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 926 | 513.48 | wind | 3.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 929 | 513.48 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 932 | 513.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 936 | 513.52 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 981 | 513.67 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 4 |