FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0113000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF889, eukaryote family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0142) R2 : 0.005
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0453 (0.0299) R2dN8 : 0.00646 R2N8 : 0.005
σ : 0.267
deviance : 32.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.99 0.257 3.17 0.243 0.0641 0.263 -0.124 0.842 -0.128 6.18 83 5928 -- --
31.08 0.26 3.16 0.131 0.0645 0.268 -0.181 -- -0.143 5.8 81.03 7357 -- --
30.02 0.255 3.17 0.243 0.064 0.261 -- 0.849 -0.127 6.79 83.15 5929 -- --
31.13 0.26 3.16 0.132 0.0802 0.263 -- -- -0.146 6.84 83.27 7637 -- --
30.22 0.256 3.17 0.244 -- 0.259 -- 0.823 -0.129 -- 83.19 5835 -- --
32.36 0.267 3.13 0.0951 0.0567 -- -0.148 -- -0.0365 6.14 -- -- -- --
32.39 0.267 3.13 0.0941 0.0586 -- -- -- -0.0357 7.31 -- -- -- --
31.35 0.261 3.16 0.168 -- 0.268 -- -- -0.148 -- 83.99 7309 -- --
31.58 0.262 3.16 -- 0.0796 0.234 -- -- -0.148 6.88 83.47 7635 -- --
32.58 0.267 3.13 0.0951 -- -- -- -- -0.0347 -- -- -- -- --
32.63 0.267 3.14 -- 0.0595 -- -- -- -0.0462 7.2 -- -- -- --
31.8 0.263 3.16 -- -- 0.245 -- -- -0.149 -- 84 6966 -- --
32.81 0.267 3.14 -- -- -- -- -- -0.0453 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.50 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 29.57 atmosphere 1000.0 90 > th dose independent rect. 3 23
4 29.64 atmosphere 1005.0 10 > th dose dependent rect. 2 2
7 29.70 radiation 1.0 43200 < th dose dependent rect. 3 1
9 29.89 temperature 20.0 30 > th dose dependent rect. 2 1
10 29.89 humidity 80.0 14400 < th dose dependent rect. 3 6
11 29.90 temperature 20.0 30 > th dose independent rect. 2 1
13 29.92 atmosphere 1000.0 30 > th dose independent rect. 2 1
23 29.96 wind 3.0 30 < th dose independent rect. 2 1
26 29.96 wind 7.0 30 < th dose dependent rect. 2 1
28 29.96 wind 1.0 14400 < th dose dependent rect. 6 1
30 29.97 temperature 10.0 30 > th dose independent rect. 2 1
32 29.97 temperature 30.0 30 < th dose independent rect. 2 1
33 29.97 humidity 50.0 30 > th dose independent rect. 2 1
37 29.97 atmosphere 1010.0 30 < th dose independent rect. 2 1
39 29.97 radiation 1.0 30 < th dose independent rect. 2 1
44 29.97 precipitation 0.1 30 < th dose independent rect. 2 1
45 29.97 temperature 10.0 30 > th dose independent rect. 3 23
47 29.97 humidity 50.0 30 > th dose dependent rect. 2 1
50 29.97 radiation 1.0 30 < th dose dependent rect. 2 1
55 29.97 precipitation 0.1 30 < th dose dependent rect. 2 1
74 30.05 wind 9.0 1440 < th dose independent rect. 3 1
75 30.05 temperature 10.0 1440 > th dose independent rect. 3 1
78 30.05 temperature 30.0 1440 < th dose independent rect. 3 1
82 30.05 humidity 50.0 1440 > th dose independent rect. 3 1
91 30.05 atmosphere 995.0 1440 > th dose independent rect. 3 1
92 30.05 radiation 1.0 1440 < th dose independent rect. 3 1
112 30.05 temperature 10.0 1440 > th dose independent rect. 4 23
126 30.06 wind 1.0 30 > th dose independent rect. 2 1
127 30.06 atmosphere 1015.0 30 < th dose dependent rect. 2 1
132 30.09 temperature 30.0 30 < th dose dependent rect. 2 1
141 30.16 humidity 70.0 4320 > th dose dependent rect. 3 8
150 30.20 humidity 70.0 14400 > th dose independent rect. 8 1
155 30.21 humidity 50.0 4320 > th dose dependent rect. 23 14
166 30.24 humidity 80.0 4320 > th dose independent rect. 3 10
171 30.24 humidity 90.0 4320 < th dose dependent rect. 23 16
189 30.27 humidity 80.0 4320 > th dose independent rect. 3 8
191 30.27 humidity 80.0 4320 < th dose independent rect. 3 10
193 30.27 humidity 50.0 4320 > th dose dependent sin 6 NA
200 30.27 humidity 80.0 14400 < th dose dependent rect. 21 13
244 30.29 humidity 70.0 14400 > th dose independent rect. 4 5
278 30.30 humidity 70.0 14400 < th dose independent rect. 8 1
279 30.30 humidity 70.0 14400 > th dose independent rect. 6 3
284 30.30 wind 1.0 14400 < th dose dependent rect. 4 4
307 30.31 humidity 80.0 4320 > th dose independent rect. 23 14
311 30.31 humidity 90.0 4320 < th dose dependent sin 6 NA
324 30.32 humidity 80.0 4320 > th dose independent sin 5 NA
327 30.32 humidity 90.0 4320 < th dose independent rect. 4 6
330 30.32 humidity 80.0 4320 < th dose independent rect. 3 8
379 30.34 precipitation 0.1 30 < th dose independent rect. 3 23
399 30.34 precipitation 0.1 30 < th dose dependent rect. 3 23
402 30.35 humidity 80.0 4320 < th dose independent sin 5 NA
416 30.36 humidity 70.0 14400 < th dose independent rect. 7 3
485 30.38 wind 1.0 14400 < th dose independent rect. 6 1
486 30.38 wind 1.0 14400 < th dose independent rect. 4 4
517 30.39 humidity 80.0 4320 < th dose independent rect. 21 17
603 30.42 wind 1.0 14400 > th dose independent rect. 4 4
624 30.42 humidity 50.0 4320 > th dose dependent rect. 11 1
631 30.42 humidity 90.0 4320 < th dose dependent rect. 11 4
649 30.43 humidity 90.0 90 < th dose independent rect. 2 1
660 30.43 humidity 90.0 4320 < th dose dependent rect. 11 2
683 30.44 wind 1.0 14400 > th dose independent rect. 5 2
722 30.45 humidity 80.0 4320 > th dose dependent rect. 8 1
735 30.46 humidity 90.0 4320 > th dose independent rect. 8 1
744 30.46 humidity 70.0 4320 > th dose dependent rect. 10 1
770 30.47 humidity 70.0 4320 > th dose independent rect. 10 1
771 30.47 humidity 80.0 4320 < th dose independent rect. 8 5
807 30.48 humidity 50.0 4320 > th dose independent rect. 14 1
820 30.48 humidity 70.0 4320 > th dose dependent rect. 8 5
882 30.50 humidity 80.0 4320 > th dose dependent rect. 7 3
913 30.51 wind 5.0 14400 < th dose independent rect. 11 1
925 30.51 humidity 80.0 4320 < th dose dependent rect. 14 1
959 30.52 wind 9.0 30 < th dose independent rect. 3 23