Os01g0838100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0838100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.09 | 0.451 | 9.81 | -0.0787 | 0.488 | -1.08 | -0.68 | 1.75 | 0.28 | 11.2 | 23.81 | 1293 | -- | -- |
| 93.2 | 0.45 | 9.86 | -0.55 | 0.437 | -0.968 | -0.797 | -- | 0.201 | 11.2 | 22.46 | 1175 | -- | -- |
| 93.87 | 0.451 | 9.81 | -0.0652 | 0.487 | -1.09 | -- | 1.94 | 0.293 | 11.5 | 23.7 | 1265 | -- | -- |
| 95.63 | 0.455 | 9.86 | -0.579 | 0.463 | -0.944 | -- | -- | 0.195 | 11.6 | 22.25 | 1200 | -- | -- |
| 102.52 | 0.472 | 9.8 | -0.0164 | -- | -1.35 | -- | 2.04 | 0.373 | -- | 22.36 | 1048 | -- | -- |
| 122.71 | 0.519 | 9.91 | -0.871 | 0.615 | -- | -0.564 | -- | -0.00782 | 11.8 | -- | -- | -- | -- |
| 124.03 | 0.522 | 9.91 | -0.893 | 0.618 | -- | -- | -- | -0.00945 | 12 | -- | -- | -- | -- |
| 105.05 | 0.477 | 9.87 | -0.552 | -- | -1.18 | -- | -- | 0.209 | -- | 22.07 | 1019 | -- | -- |
| 101.06 | 0.468 | 9.85 | -- | 0.61 | -1.17 | -- | -- | 0.277 | 12.2 | 18.94 | 4760 | -- | -- |
| 148.09 | 0.569 | 9.92 | -0.912 | -- | -- | -- | -- | -0.0181 | -- | -- | -- | -- | -- |
| 145.05 | 0.563 | 9.89 | -- | 0.63 | -- | -- | -- | 0.09 | 12.1 | -- | -- | -- | -- |
| 110.95 | 0.491 | 9.85 | -- | -- | -1.66 | -- | -- | 0.323 | -- | 16.3 | 955 | -- | -- |
| 170.05 | 0.609 | 9.9 | -- | -- | -- | -- | -- | 0.0831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 86.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 35 | 89.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 52 | 89.68 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 62 | 90.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 71 | 90.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 84 | 90.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 163 | 91.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 188 | 91.57 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 221 | 91.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 290 | 92.59 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 301 | 92.71 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 14 |
| 312 | 92.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 313 | 92.82 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 317 | 92.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 319 | 92.87 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 339 | 92.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 398 | 93.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 402 | 93.49 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 403 | 93.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 410 | 93.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 427 | 93.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 15 |
| 444 | 93.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 453 | 93.63 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 470 | 93.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 490 | 93.74 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 500 | 93.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 519 | 93.79 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 545 | 93.83 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 568 | 93.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 577 | 93.89 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 625 | 93.97 | temperature | 30 | 720 | < th | dose independent | sin | 20 | NA |
| 662 | 94.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 670 | 94.03 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 759 | 94.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 773 | 94.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 814 | 94.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 843 | 94.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 853 | 94.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 969 | 94.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 999 | 94.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |