Os02g0776800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Replication protein A 70kDa.
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Os02g0776800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Replication protein A 70kDa.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.53 | 0.26 | 10.1 | 0.187 | 0.0892 | -0.694 | -0.584 | -0.4 | 0.0496 | 17.5 | 0.009963 | 109 | -- | -- |
| 30.85 | 0.259 | 10.1 | 0.176 | 0.0793 | -0.701 | -0.64 | -- | 0.0529 | 19.7 | 0.0001369 | 108 | -- | -- |
| 31.3 | 0.261 | 10.1 | 0.184 | 0.105 | -0.697 | -- | -0.31 | 0.0421 | 17.8 | 1.831e-05 | 112 | -- | -- |
| 31.64 | 0.262 | 10.1 | 0.191 | 0.077 | -0.698 | -- | -- | 0.04 | 17.7 | 0.004876 | 125 | -- | -- |
| 31.54 | 0.262 | 10.1 | 0.188 | -- | -0.712 | -- | -0.329 | 0.0462 | -- | 5.077e-07 | 114 | -- | -- |
| 37.99 | 0.289 | 10.1 | 0.228 | 0.836 | -- | 0.346 | -- | 0.0956 | 13.1 | -- | -- | -- | -- |
| 38.49 | 0.291 | 10.1 | 0.241 | 0.836 | -- | -- | -- | 0.0977 | 13.2 | -- | -- | -- | -- |
| 31.84 | 0.263 | 10.1 | 0.173 | -- | -0.712 | -- | -- | 0.0339 | -- | 0.009988 | 127 | -- | -- |
| 32.47 | 0.265 | 10.1 | -- | 0.0661 | -0.7 | -- | -- | 0.032 | 17.9 | 6.11e-07 | 126 | -- | -- |
| 81.75 | 0.422 | 10.1 | 0.209 | -- | -- | -- | -- | 0.0809 | -- | -- | -- | -- | -- |
| 40.01 | 0.296 | 10.1 | -- | 0.832 | -- | -- | -- | 0.0709 | 13.2 | -- | -- | -- | -- |
| 32.65 | 0.266 | 10.1 | -- | -- | -0.713 | -- | -- | 0.0321 | -- | 2.072e-05 | 128 | -- | -- |
| 82.9 | 0.425 | 10.1 | -- | -- | -- | -- | -- | 0.0577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 3 | 20.06 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 12 | 20.79 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 40 | 22.54 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 47 | 22.68 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 53 | 22.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 55 | 22.90 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 56 | 22.92 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 15 |
| 57 | 22.92 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 65 | 23.18 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 67 | 23.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 69 | 23.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 73 | 23.26 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 9 |
| 75 | 23.26 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 78 | 23.27 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 79 | 23.27 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 82 | 23.27 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 86 | 23.27 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 87 | 23.27 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 89 | 23.31 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 117 | 23.43 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 15 |
| 120 | 23.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 157 | 23.76 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 163 | 23.81 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 166 | 23.84 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 168 | 23.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 170 | 23.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 171 | 23.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 173 | 23.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 174 | 23.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 175 | 23.85 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 198 | 23.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 199 | 23.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 210 | 24.04 | radiation | 1.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 215 | 24.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 219 | 24.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 224 | 24.15 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 258 | 24.33 | radiation | 1.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 270 | 24.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 294 | 24.38 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 363 | 24.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 367 | 24.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 370 | 24.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 371 | 24.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 372 | 24.52 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 376 | 24.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 378 | 24.54 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 397 | 24.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 400 | 24.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 401 | 24.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 402 | 24.62 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 403 | 24.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 419 | 24.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 420 | 24.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 421 | 24.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 436 | 24.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 441 | 24.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 452 | 24.83 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 457 | 24.84 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 462 | 24.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 467 | 24.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 470 | 24.87 | radiation | 1.0 | 10 | < th | dose independent | sin | 9 | NA |
| 508 | 24.97 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 519 | 24.99 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 544 | 25.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 547 | 25.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 551 | 25.06 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 552 | 25.06 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 558 | 25.06 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 562 | 25.06 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 571 | 25.06 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 572 | 25.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 575 | 25.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 579 | 25.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 581 | 25.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 583 | 25.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 587 | 25.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 589 | 25.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 597 | 25.12 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 603 | 25.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 682 | 25.20 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 716 | 25.32 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 767 | 25.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 784 | 25.49 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 830 | 25.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 831 | 25.60 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 832 | 25.60 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 844 | 25.63 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 846 | 25.63 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 847 | 25.63 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 849 | 25.63 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 850 | 25.63 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 870 | 25.65 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 873 | 25.65 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 879 | 25.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 889 | 25.70 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 898 | 25.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 931 | 25.81 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 937 | 25.82 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 960 | 25.86 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 962 | 25.86 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |