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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0214100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Replication protein A1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0381) R2 : 0.108
β1 : -0.872 (0.14) R2dD : 0.0789 R2D : 0.0878
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.228 (0.0815) R2dN8 : 0.0205 R2N8 : 0.0294
σ : 0.716
deviance : 234.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.73 0.685 3.59 -2.29 0.304 1.77 -1.15 -11.9 0.2 3.95 30.15 757 -- --
223.03 0.696 3.45 -1.04 0.299 0.468 -1.41 -- 0.333 3.2 30.7 765 -- --
216.52 0.685 3.59 -2.29 0.304 1.77 -- -11.9 0.2 3.35 30.15 757 -- --
224.26 0.697 3.44 -0.98 0.289 0.514 -- -- 0.25 3.38 29.7 772 -- --
220.15 0.691 3.59 -2.29 -- 1.77 -- -12.3 0.262 -- 30.5 772 -- --
227.61 0.707 3.45 -0.907 0.257 -- -0.995 -- 0.216 2.65 -- -- -- --
230.61 0.711 3.45 -0.882 0.263 -- -- -- 0.223 1.27 -- -- -- --
227.97 0.703 3.45 -0.955 -- 0.433 -- -- 0.208 -- 28.3 1052 -- --
248.63 0.734 3.43 -- 0.279 0.344 -- -- 0.315 3.05 29.46 749 -- --
234.87 0.716 3.45 -0.872 -- -- -- -- 0.228 -- -- -- -- --
251.1 0.741 3.43 -- 0.248 -- -- -- 0.321 1.13 -- -- -- --
252.09 0.739 3.41 -- -- 0.312 -- -- 0.366 -- 30.22 775 -- --
254.91 0.745 3.42 -- -- -- -- -- 0.325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.31 temperature 30 720 < th dose independent rect. 13 15
4 209.61 temperature 30 720 < th dose independent rect. 23 20
5 209.84 temperature 30 720 < th dose independent rect. 23 22
6 210.00 temperature 30 720 < th dose independent rect. 14 7
7 210.10 temperature 30 720 < th dose independent rect. 7 21
8 210.15 temperature 30 720 < th dose independent rect. 9 17
9 210.30 temperature 30 720 < th dose independent rect. 9 10
10 210.32 temperature 30 720 > th dose independent rect. 12 6
13 210.48 temperature 30 720 > th dose independent rect. 12 3
17 210.53 temperature 30 720 < th dose independent rect. 7 14
19 210.55 temperature 15 270 > th dose dependent rect. 12 19
22 210.67 temperature 30 720 < th dose independent rect. 1 18
40 210.78 temperature 25 10 > th dose independent rect. 13 20
55 211.20 temperature 30 720 < th dose independent rect. 7 12
80 211.37 temperature 25 30 > th dose independent rect. 13 18
102 211.88 temperature 25 270 < th dose independent rect. 16 9
123 211.97 temperature 25 720 > th dose dependent rect. 12 12
135 212.06 temperature 15 30 > th dose dependent rect. 13 20
140 212.10 temperature 30 720 > th dose independent sin 17 NA
148 212.17 temperature 30 720 < th dose independent sin 16 NA
153 212.20 temperature 30 720 < th dose independent rect. 14 23
220 212.67 temperature 25 720 > th dose dependent rect. 12 5
230 212.73 radiation 1 90 < th dose dependent sin 14 NA
281 213.07 temperature 25 720 > th dose dependent sin 16 NA
286 213.10 temperature 25 10 > th dose dependent rect. 23 1
290 213.14 temperature 20 10 > th dose dependent rect. 15 18
326 213.18 temperature 10 270 > th dose dependent rect. 12 11
335 213.23 temperature 30 720 < th dose independent rect. 11 8
341 213.25 wind 9 90 > th dose independent rect. 13 2
357 213.26 wind 9 90 > th dose dependent rect. 13 2
369 213.33 temperature 30 720 > th dose independent no NA NA
495 213.52 temperature 10 270 > th dose dependent rect. 21 10
499 213.57 wind 9 10 > th dose independent rect. 13 1
511 213.57 wind 9 10 > th dose dependent rect. 13 1
524 213.58 temperature 30 720 > th dose independent rect. 16 23
529 213.60 radiation 1 90 < th dose independent sin 14 NA
539 213.63 temperature 15 720 > th dose dependent rect. 21 2
543 213.67 temperature 30 720 < th dose independent no NA NA
560 213.69 temperature 20 10 > th dose dependent rect. 15 16
576 213.77 wind 7 270 < th dose independent rect. 12 18
589 213.86 humidity 50 720 < th dose independent rect. 13 1
595 213.88 temperature 30 270 < th dose dependent rect. 16 10
598 213.90 radiation 1 90 > th dose independent rect. 13 18
601 213.92 temperature 30 720 < th dose independent rect. 3 16
623 214.03 temperature 25 10 > th dose dependent sin 12 NA
657 214.16 temperature 25 10 > th dose independent rect. 23 1
703 214.40 wind 5 10 < th dose independent rect. 9 6
716 214.44 radiation 1 90 > th dose independent sin 14 NA
717 214.44 wind 9 270 < th dose dependent rect. 7 4
729 214.50 temperature 30 30 < th dose dependent rect. 19 10
800 214.70 temperature 30 10 < th dose dependent rect. 17 11
811 214.75 radiation 1 10 < th dose dependent sin 13 NA
865 214.96 radiation 1 10 > th dose independent rect. 13 18
886 215.04 temperature 25 10 < th dose independent rect. 18 10
892 215.06 wind 7 90 < th dose independent rect. 7 6
898 215.08 wind 7 270 < th dose independent rect. 7 4
952 215.22 temperature 20 10 > th dose dependent rect. 15 11
955 215.24 atmosphere 1010 270 < th dose independent rect. 9 2
960 215.26 wind 9 10 < th dose dependent rect. 9 6
969 215.28 wind 9 90 < th dose dependent rect. 9 4