BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0181800 Os03g0181800|AK070399
(573 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0181800 Protein of unknown function DUF936, plant fami... 966 0.0
Os09g0516700 Protein of unknown function DUF936, plant fami... 147 3e-35
Os08g0541500 Protein of unknown function DUF936, plant fami... 145 6e-35
Os11g0120200 Protein of unknown function DUF936, plant fami... 94 3e-19
Os12g0120000 Protein of unknown function DUF936, plant fami... 94 3e-19
Os01g0108800 Protein of unknown function DUF936, plant fami... 94 4e-19
>Os03g0181800 Protein of unknown function DUF936, plant family protein
Length = 573
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/573 (85%), Positives = 491/573 (85%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH
Sbjct: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLMQ 120
STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSI CIGNPKDLMQ
Sbjct: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIPVPVLVGVRPVPGRNPCIGNPKDLMQ 120
Query: 121 MSTPTGISEALAHQRKATKSAELSESEKENSQRKVVIKEQKAVVASRYMLGISSNNSKIT 180
MSTPTGISEALAHQRKATKSAELSESEKENSQRKVVIKEQKAVVASRYMLGISSNNSKIT
Sbjct: 121 MSTPTGISEALAHQRKATKSAELSESEKENSQRKVVIKEQKAVVASRYMLGISSNNSKIT 180
Query: 181 NLNSSIDSDKSNGGSSICSANQKSAPTKFKQESKPQERPNTPSRSPAKIVSAKQEINKDT 240
NLNSSIDSDKSNGGSSICSANQKSAPTKFKQESKPQERPNTPSRSPAKIVSAKQEINKDT
Sbjct: 181 NLNSSIDSDKSNGGSSICSANQKSAPTKFKQESKPQERPNTPSRSPAKIVSAKQEINKDT 240
Query: 241 RKTSASSPSQNGSAVVKKQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
RKTSASSPSQNGSAVVKKQM
Sbjct: 241 RKTSASSPSQNGSAVVKKQMSKDSKKESASEKNSPPKLYKTSPPTPTPTPPPPAMTSPPK 300
Query: 301 LNLAAKXXXXXXXXXXXXXXKRRVTETVSWDSLPTSLIKSVKVVARRKTIALVVXXXXXX 360
LNLAAK KRRVTETVSWDSLPTSLIKSVKVVARRKTIALVV
Sbjct: 301 LNLAAKPNGTSGTVTSTPTVKRRVTETVSWDSLPTSLIKSVKVVARRKTIALVVAAEAQR 360
Query: 361 XXXXXXSLLKGLGIFAEIRKSAEEDPHAAITKFFQLNRLIIQQSVFWKDYSSEPVKESRP 420
SLLKGLGIFAEIRKSAEEDPHAAITKFFQLNRLIIQQSVFWKDYSSEPVKESRP
Sbjct: 361 EATAAASLLKGLGIFAEIRKSAEEDPHAAITKFFQLNRLIIQQSVFWKDYSSEPVKESRP 420
Query: 421 EKEKPSRKASASQNKAVAGSTAKNSDDAYTSEKIDWAREDGFKEISRSWIILKKESQSWF 480
EKEKPSRKASASQNKAVAGSTAKNSDDAYTSEKIDWAREDGFKEISRSWIILKKESQSWF
Sbjct: 421 EKEKPSRKASASQNKAVAGSTAKNSDDAYTSEKIDWAREDGFKEISRSWIILKKESQSWF 480
Query: 481 LSFLEDALEAGFKFEGQNKNTRERVRGHSKGGDGQIAVRLSQLKETSNWLDQLHSEVDKS 540
LSFLEDALEAGFKFEGQNKNTRERVRGHSKGGDGQIAVRLSQLKETSNWLDQLHSEVDKS
Sbjct: 481 LSFLEDALEAGFKFEGQNKNTRERVRGHSKGGDGQIAVRLSQLKETSNWLDQLHSEVDKS 540
Query: 541 QDALVETIEQLKQKVYTCLLGTVETAASALEAR 573
QDALVETIEQLKQKVYTCLLGTVETAASALEAR
Sbjct: 541 QDALVETIEQLKQKVYTCLLGTVETAASALEAR 573
>Os09g0516700 Protein of unknown function DUF936, plant family protein
Length = 463
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 142/238 (59%), Gaps = 18/238 (7%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MASL PGVL+K+L+++N+DVKV GE+RS LLQV+SIVPA+ GS+L+ + GF++KVSDSSH
Sbjct: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLMQ 120
+TYVSL ++ ++LILS+K+QLGQFI+V++++++ C+GNP+DL+
Sbjct: 61 ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV 120
Query: 121 MSTPTGISEALAHQR---KATKSAELSESEKENSQRKVVIKEQKA----VVASRYMLGIS 173
S+ + A K T + + K+ S + ++++K + AS +G
Sbjct: 121 TSSSNFLGNKKAQPTNGLKTTNGLKTTNGLKDTSS--LSLEKEKGKLGKINASHKTIGAE 178
Query: 174 SNNSKITNLNSSIDSDKSNGGSSICSANQKSAPTKFKQESKPQERPNTPSRSPAKIVS 231
+ +T NSS+ NG ++K A K ++KP +TPS SP + S
Sbjct: 179 NKKPMLTKSNSSLSKQALNG-----LGDKKEA---IKSKAKPAGTRSTPS-SPTSVYS 227
>Os08g0541500 Protein of unknown function DUF936, plant family protein
Length = 733
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 93/119 (78%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
MASL PGVLLK+L+++NSDVKV GE+RS LLQV+SIVPA+ GS+L+ + GF++KVSDSSH
Sbjct: 1 MASLVPGVLLKLLQHMNSDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
Query: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIXXXXXXXXXXXXXXXXCIGNPKDLM 119
+TYVSL +E ++LILS+ +QLGQFI+V++++++ C+G+P+DL+
Sbjct: 61 ATYVSLPEEQHDLILSDTIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGSPEDLV 119
>Os11g0120200 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 79/125 (63%), Gaps = 6/125 (4%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGS---ELWPDHGFFIKVSD 57
MA++TPGVLLK+L+ +++D +V G++RS +LQV ++VPA+T S LWP +GF +++SD
Sbjct: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
Query: 58 SSHSTYVSLSKEDNELILSNKLQL-GQFIYVEKVQSS--IXXXXXXXXXXXXXXXXCIGN 114
HSTYV S D + ++S + QL G +++++++ + + +GN
Sbjct: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIRPVPSSRSVSFVGN 120
Query: 115 PKDLM 119
P+ L+
Sbjct: 121 PEPLV 125
>Os12g0120000 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGS---ELWPDHGFFIKVSD 57
MA++TPGVLLK+L+ +++D +V G++RS +LQV ++VPA+T S LWP +GF +++SD
Sbjct: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
Query: 58 SSHSTYVSLSKEDNELILSNKLQL-GQFIYVEKVQ 91
HSTYV S D + ++S + QL G +++++++
Sbjct: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLR 95
>Os01g0108800 Protein of unknown function DUF936, plant family protein
Length = 231
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 1 MASLTPGVLLKVLKNINSDV-KVCGEYRSILLQVISIVPA-ITGSELWPDHG-FFIKVSD 57
M++L+ GVLLK+L + + K GE+R+ LLQV IVPA + +L P HG F++KVSD
Sbjct: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
Query: 58 SSHSTYVSLSKEDNELILSNKLQLGQFIYVEKV 90
SSHS Y +L +L+LSNKLQLGQF++++++
Sbjct: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRL 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.124 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,738,425
Number of extensions: 528163
Number of successful extensions: 2018
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2012
Number of HSP's successfully gapped: 7
Length of query: 573
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 467
Effective length of database: 11,501,117
Effective search space: 5371021639
Effective search space used: 5371021639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)