BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0146400 Os03g0146400|AK111974
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment) 962 0.0
Os03g0805700 Rieske [2Fe-2S] region domain containing protein 224 2e-58
Os03g0805900 Rieske [2Fe-2S] region domain containing protein 219 4e-57
Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 pr... 162 7e-40
Os03g0806300 109 4e-24
Os03g0806350 82 8e-16
Os10g0567100 Similar to Chlorophyll b synthase (Fragment) 74 3e-13
Os10g0567400 Rieske [2Fe-2S] region domain containing protein 70 4e-12
>Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment)
Length = 529
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/479 (96%), Positives = 463/479 (96%)
Query: 51 PPSVPGEADQAPGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWK 110
PPSVPGEADQAPGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWK
Sbjct: 51 PPSVPGEADQAPGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWK 110
Query: 111 DPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEA 170
DPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEA
Sbjct: 111 DPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEA 170
Query: 171 KAVRSPKACAIKFPTLVSQGLLFVWPDENGWEKATATKPPMLPKEFEDPAFSTVTIQRDL 230
KAVRSPKACAIKFPTLVSQGLLFVWPDENGWEKATATKPPMLPKEFEDPAFSTVTIQRDL
Sbjct: 171 KAVRSPKACAIKFPTLVSQGLLFVWPDENGWEKATATKPPMLPKEFEDPAFSTVTIQRDL 230
Query: 231 YYGYDTLMENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGYSGSNSGNPRISATF 290
YYGYDTLMENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGYSGSNSGNPRISATF
Sbjct: 231 YYGYDTLMENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGYSGSNSGNPRISATF 290
Query: 291 VAPCYALNKIEIDTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAW 350
VAPCYALNKIEIDTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAW
Sbjct: 291 VAPCYALNKIEIDTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAW 350
Query: 351 WQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFV 410
WQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFV
Sbjct: 351 WQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFV 410
Query: 411 LAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTL 470
LAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTL
Sbjct: 411 LAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTL 470
Query: 471 QKVFMGATVAFCATAGIPADVQFRXXXXXXXXXXXXXXXXFYTLQKNFVFVDYVHAEID 529
QKVFMGATVAFCATAGIPADVQFR FYTLQKNFVFVDYVHAEID
Sbjct: 471 QKVFMGATVAFCATAGIPADVQFRLLLAAAALVSAAVAYAFYTLQKNFVFVDYVHAEID 529
>Os03g0805700 Rieske [2Fe-2S] region domain containing protein
Length = 543
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 241/501 (48%), Gaps = 79/501 (15%)
Query: 70 SSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLA 129
++ +E+F W D WYPV+ V DLDP P +L +V W D GEW +DD CPHRLA
Sbjct: 76 AAGEERFDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFD-GGGEWRVVDDACPHRLA 134
Query: 130 PLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQ 189
PLSEGR+D G LQC+YHGW FDG G+C IPQA GP ++ KAC +P++V
Sbjct: 135 PLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVH--KNSKACVASYPSVVQN 192
Query: 190 GLLFVWP--DENGWEKATATKPPMLPKEFEDPAFSTVTIQRDLYYGY------------- 234
+L+ +P + + +PP P + +DP+F+TV RD YGY
Sbjct: 193 NILWFYPRTEPEYRDVLQRKRPPYFP-DLDDPSFNTVFGVRDFPYGYRNAQAILLRNGHI 251
Query: 235 ----DTL------MENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGY---SGSNS 281
D L M+N+ S +EF ++R P+ K+E + G+ G N
Sbjct: 252 GMQLDILCRGSIAMQNIHLLSTVEF-------DQERGGPVKMKIEEANIDGFLSIQGENW 304
Query: 282 GNPRISATFVAPCYALNKIEI--------DTKLPIFGDQKWVIWICSFNIPMAPGKTRSI 333
G+ R F+APC +N+ E+ D + Q ++++C IP+APG++R I
Sbjct: 305 GHFR----FIAPC-TINRSELPLETLAHFDQEKQQQQPQGMLVFLC---IPVAPGRSRVI 356
Query: 334 VCSARNFFQFSMPGKAW-WQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADI 392
+ F AW + +PRW H +N V D D+ +L +E+ F + +
Sbjct: 357 -------WVFPQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVD----- 404
Query: 393 NQQYTKITFTPTQADRFVLAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQ 452
++ K + PT +D ++ FR W RK+ Q W P LP+T +K ++++RY
Sbjct: 405 --KWQKACYVPTLSDNMIITFRNWFRKYCKHQVGW-ATPMVNQLPTTP-TKDQLMERYWS 460
Query: 453 HTLKCSSCKGAYNAFQTLQKVFMGATVAFC-------ATAGIPADVQFRXXXXXXXXXXX 505
H ++C+SC A + ++ A+VA T + + VQ
Sbjct: 461 HVMQCTSCSAALKWMRAMEVALQVASVAVVGFLAAGKGTTVVTSAVQRAAVVAAAALCFA 520
Query: 506 XXXXXFYTLQKNFVFVDYVHA 526
++K+F F DYVHA
Sbjct: 521 ASRWLANFIEKSFYFQDYVHA 541
>Os03g0805900 Rieske [2Fe-2S] region domain containing protein
Length = 525
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 230/474 (48%), Gaps = 37/474 (7%)
Query: 70 SSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLA 129
++ +E+F W D WYPV+ V DLD P ++ +V+W D GEW +DD CPHRLA
Sbjct: 72 AAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDACPHRLA 131
Query: 130 PLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQ 189
PLSEGR+D GCLQC+YHGW FDG G+C IPQA GP ++ KAC +P++V
Sbjct: 132 PLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVH--KNSKACVASYPSVVQN 189
Query: 190 GLLFVWP-DENGWEKATATKPPMLPKEFEDPAFSTVTIQRDLYYGYDTLMENVSDPSHIE 248
+L+ +P E +++ K P +E +DP+ + RDL YGY ++ + ++
Sbjct: 190 NILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGYRNYLQAIH--KQLD 247
Query: 249 FAHHKVTGRRDRARPLPFKM--ESSGAWGYSGSNSGNPRISATFVAPCYALN-----KIE 301
+ + D+ LP KM E G+ SN F+AP + K
Sbjct: 248 ASMYVCVFEFDQEGGLPIKMNIEELNIAGFH-SNPEENWGYFKFIAPVTLIGSPFRAKPV 306
Query: 302 IDTKLPIFGDQKW-VIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWW-QLVPRWYE 359
+D ++K + F IP++PG+ R I + N W+ +++PRW+
Sbjct: 307 VDQDNNNTNNKKQPEVTTVFFCIPVSPGRCRVIWANGYNL-------DGWFDKMIPRWWL 359
Query: 360 HWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAWLRK 419
H +N V D D VL +E+ + + ++ + K + PT +D ++AFR W +K
Sbjct: 360 HIKTNQVLDSDSSVLHIEERNYAAFGLDN-------WHKACYVPTSSDNLIIAFRNWFKK 412
Query: 420 FGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTLQKVFMGATV 479
+ N+Q W ++ P++ ++ E+ +RY H ++C+SC A + L+ A+V
Sbjct: 413 YCNNQVGWLTPMVNQLPPAS--TRVEVYERYWSHVMQCTSCSAALKWMRALEVALQVASV 470
Query: 480 AFCA--TAG----IPADVQFRXXXXXXXXXXXXXXXXFYTLQKNFVFVDYVHAE 527
A AG + + VQ ++K F F DYV A+
Sbjct: 471 AVVGFLAAGKGTVVTSGVQRAAVVAAAVLCFAASRWLAGFIEKTFYFEDYVLAD 524
>Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 precursor
Length = 539
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 123/450 (27%), Positives = 208/450 (46%), Gaps = 77/450 (17%)
Query: 62 PGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALD 121
P E E S+A ++ WR+ WYP+ L +++ P + +R LV+++D +G +
Sbjct: 71 PKEQEDDASAA--RYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRD-AAGVLRCHE 127
Query: 122 DRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAI 181
DRCPHRLA LSEG++ + G L+C YHGW FDG G C +IPQ P+G AK R+ ACA
Sbjct: 128 DRCPHRLAKLSEGQLVD-GKLECLYHGWQFDGEGKCVKIPQ-LPDG--AKIPRN--ACAR 181
Query: 182 KFPTLVSQGLLFVWPDENGWEKATATKPP---MLP--KEFEDPAFSTVTIQRDLYYGYDT 236
+ SQG+++ W + T PP LP + + P F+ ++ +L Y +
Sbjct: 182 SYEVRDSQGVVWAW--------MSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSI 233
Query: 237 LMENVSDPSHIEFAHHKV--TGRRDRARPLPFKMESSGAWGYSG----SNSGNPRISATF 290
L+EN+ DP+H+ +H + T +R+ A+PL F++ G++G + + R F
Sbjct: 234 LLENLMDPAHVPISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRF 293
Query: 291 VAPCYALNKIEI---DTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPG 347
APC N +E D K F ++C P GK+ +V S
Sbjct: 294 EAPCVLTNTLEFVDKDGKEQCFSAH----FLCR---PAGQGKSMLLVRFG------STQT 340
Query: 348 KAWWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQAD 407
+++PRWY H + V++ DM L Q ++ L + ++ +D
Sbjct: 341 SPLVKVLPRWYFHQNACKVFEQDMGFLSSQNEVLLREKVPTK--------ELYLNLRSSD 392
Query: 408 RFVLAFRAWLRKFGNSQPDWFGNPSQ---------EVLPSTVLSKREM------------ 446
+V +R W+ + G+ P +FG+ + E P+ ++
Sbjct: 393 TWVAEYRRWMDRAGHGMPYYFGHSTLSPPPVPAVVEQAPAGAVAGMSASFPAKGGVGATH 452
Query: 447 ----LDRYEQHTLKCSSCKGAYNAFQTLQK 472
+RY +H + C C+ + + +L+
Sbjct: 453 APNPTNRYFRHVVHCKGCRDSVKRYASLKN 482
>Os03g0806300
Length = 134
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 6/136 (4%)
Query: 101 LLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRI 160
++ +V W D GEW +DD CPHRLAPLSEGR+D G LQC+YHGW FDG G+C I
Sbjct: 2 VMGLSVVAWLD-GGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFI 60
Query: 161 PQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWP--DENGWEKATATKPPMLPK-EFE 217
PQA GP ++ KAC +P++V +L+ +P + + +PP +P+ + +
Sbjct: 61 PQAPALGPPVH--KNSKACVASYPSVVQNNILWFYPRSEPEYCDVLKRKRPPYVPEIDDD 118
Query: 218 DPAFSTVTIQRDLYYG 233
DP+ V RDL YG
Sbjct: 119 DPSHFMVYGVRDLLYG 134
>Os03g0806350
Length = 248
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 23/168 (13%)
Query: 318 ICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWW--QLVPRWYEHWTSNLVYDGDMIVLQ 375
+ F +P+APG++R I S ++ + G W +++PRW+ H TSN + D D L
Sbjct: 58 VVLFTVPVAPGRSRFIWAS-----RYKVGG---WLDKILPRWFYHMTSNTILDSD-TYLH 108
Query: 376 GQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAWLRKFGNSQPDWFGNPSQEV 435
+++ + ++ + K + PT +D V+A+R W RK+ N Q W NP+ V
Sbjct: 109 VEDRNITTVGLDN-------WHKACYVPTSSDNLVIAYRNWFRKYCNHQIGW-ANPNPTV 160
Query: 436 ---LPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTLQKVFMGATVA 480
LP T ++ ++L+RY H ++C+SC+ A + L+ A VA
Sbjct: 161 KQQLPQTP-TRDQLLERYWSHVMQCTSCRAALKGMRALEITLQVAAVA 207
>Os10g0567100 Similar to Chlorophyll b synthase (Fragment)
Length = 542
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 138/362 (38%), Gaps = 47/362 (12%)
Query: 79 RDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDE 138
++ WYPV DL P VI++ K G + + C HR PL G + E
Sbjct: 218 KNFWYPVVFSGDLKDDTMVPIDCFEEQWVIFRG-KDGRPGCVQNTCAHRACPLHLGSVSE 276
Query: 139 TGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWPDE 198
G +QC +HGW + G C ++P A + P +G++++WP +
Sbjct: 277 -GRIQCPFHGWEYSTDGKCEKMP----------ATKLLNVRIRSLPCFEQEGMVWIWPGD 325
Query: 199 NGWEKATATKPPMLPKEFEDPAFSTVTIQRDLYYGYDTLMENVSDPSHIEFAHHKVTGRR 258
E + P P F A + +L + L++N+ D +H FAH +
Sbjct: 326 GTPESTIPSLQP--PSGFTIHA----EMVMELPVEHGLLLDNLLDIAHAPFAHTSTFAKG 379
Query: 259 DRARPL-PFKMESSGAWGYSGSNSGNPR-ISATFVAPCYALNKIEIDTKLPIFGDQKWVI 316
L F +SG GY +P I F PC L+ I + G I
Sbjct: 380 WSVPSLVKFLTPASGLQGY-----WDPYPIDMEFRPPCMVLSTTGISKPGKLEGKS---I 431
Query: 317 WICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWT--SNLVYDGDMIVL 374
CS ++ S R +Q S+ W + +P + W+ V + D+ ++
Sbjct: 432 KQCSTHLHQLHICLPSSRNKTRMLYQMSLNFAPWLKHIPFMHILWSHFGEKVLNEDLRLV 491
Query: 375 QGQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAW---LRKFGNSQPDWFGNP 431
GQ++ ++ + + P D+ + +R W + + N P F N
Sbjct: 492 LGQQERMINGA------------NVWNWPVSYDKLGIRYRLWRDAIERGANRLP--FNNQ 537
Query: 432 SQ 433
S+
Sbjct: 538 SE 539
>Os10g0567400 Rieske [2Fe-2S] region domain containing protein
Length = 541
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 38/316 (12%)
Query: 79 RDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDE 138
++ WYPV+ DL P VI++ K G + + C HR PL G ++E
Sbjct: 217 KNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRG-KDGRPGCVMNTCAHRACPLHLGSVNE 275
Query: 139 TGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWPDE 198
G +QC YHGW + G C ++P ++ P +G++++WP
Sbjct: 276 -GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRS----------LPCFEQEGMVWIWP-- 322
Query: 199 NGWEKATATKPPMLPKEFEDPAFSTV--TIQRDLYYGYDTLMENVSDPSHIEFAHHKVTG 256
G + +T P +LP P+ T+ I +L + L++N+ D +H F H
Sbjct: 323 -GNDPPKSTIPSLLP-----PSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFA 376
Query: 257 RRDRARPL-PFKMESSGAWGYSGSNSGNPR-ISATFVAPCYALNKIEIDT--KLPIFGDQ 312
+ L F SSG GY +P I F PC L+ I I KL +
Sbjct: 377 KGWSVPSLVKFLTPSSGLQGY-----WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTK 431
Query: 313 KWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWT--SNLVYDGD 370
+ + +I + + ++ R ++ S+ W + VP + W+ + V + D
Sbjct: 432 QCSTHLHQLHICLPSSRNKT-----RLLYRMSLDFAPWIKHVPFMHILWSHFAEKVLNED 486
Query: 371 MIVLQGQEKIFLSASK 386
+ ++ GQ++ ++ +
Sbjct: 487 LRLVLGQQERMINGAN 502
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,982,839
Number of extensions: 801782
Number of successful extensions: 1616
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1593
Number of HSP's successfully gapped: 8
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)