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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0567100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chlorophyll b synthase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0457) R2 : 0.118
β1 : 0.259 (0.171) R2dD : 0.00548 R2D : -0.00363
β2 : -- (--) R2dC : -- R2C : --
β3 : -6.33 (2.11) R2dE : 0.12 R2E : -0.273
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 96 (17.7) R2dD*E : 0.392 R2D*E : -0.00582
γ1 : -0.034 (0.0961) R2dN8 : 0.00046 R2N8 : -0.00133
σ : 0.842
deviance : 326.53
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8221
memory length : 67
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.07
open length of G : 1.54

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.53 0.848 2.9 0.17 0.0434 -3.33 0.879 66.9 -0.0455 13.5 1 89 7.05 0.95
352.92 0.875 2.94 -0.013 0.0702 2.32 0.955 -- -0.0536 13.9 0.7594 10 6.02 3.85
326.53 0.842 2.89 0.244 0.0399 -6.11 -- 91.8 -0.048 19.5 0.822 67 7.07 1.6
348.98 0.87 2.94 -0.0131 0.0347 3 -- -- -0.067 14 1.199 15 6.04 3.78
326.53 0.842 2.89 0.259 -- -6.33 -- 96 -0.034 -- 0.8221 67 7.07 1.54
365.31 0.896 2.93 0.00908 0.0479 -- 1.04 -- -0.0552 11 -- -- -- --
369.8 0.901 2.93 0.0524 0.0523 -- -- -- -0.0509 13.5 -- -- -- --
346.8 0.867 2.94 0.02 -- 4.37 -- -- -0.0568 -- 1.1 15 6.03 3.76
347.01 0.868 2.91 -- 0.00305 4.38 -- -- -0.0102 13.5 1.1 15 6.08 3.73
369.97 0.899 2.93 0.0503 -- -- -- -- -0.052 -- -- -- -- --
369.87 0.9 2.93 -- 0.0514 -- -- -- -0.0567 13.5 -- -- -- --
346.78 0.867 2.94 -- -- 4.35 -- -- -0.049 -- 1.099 15 6.05 3.76
370.04 0.898 2.93 -- -- -- -- -- -0.0576 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.79 wind 1.0 90 < th dose independent rect. 7 1
3 330.96 wind 1.0 10 < th dose independent rect. 7 2
4 331.14 wind 1.0 90 < th dose dependent rect. 7 1
51 343.07 wind 1.0 90 < th dose independent rect. 6 7
67 345.30 wind 1.0 270 < th dose dependent rect. 3 4
71 345.63 radiation 10.0 10 > th dose independent rect. 7 1
100 346.81 atmosphere 1005.0 10 > th dose dependent rect. 7 1
112 347.50 wind 1.0 90 < th dose dependent rect. 6 11
147 348.40 wind 1.0 90 < th dose independent rect. 6 11
148 348.44 atmosphere 1000.0 30 > th dose independent rect. 9 9
187 349.57 radiation 30.0 10 > th dose dependent rect. 7 1
224 349.68 atmosphere 995.0 10 > th dose independent rect. 8 23
227 349.70 radiation 40.0 90 < th dose independent rect. 8 22
228 349.72 atmosphere 1000.0 90 > th dose independent rect. 8 22
245 350.00 temperature 15.0 10 > th dose dependent rect. 7 1
249 350.10 temperature 20.0 30 > th dose independent rect. 7 1
332 351.14 atmosphere 1005.0 10 > th dose independent rect. 7 1
335 351.26 atmosphere 1010.0 10 < th dose independent rect. 6 2
337 351.28 radiation 1.0 90 > th dose independent rect. 18 14
339 351.31 wind 1.0 90 < th dose dependent rect. 16 2
345 351.38 wind 1.0 90 < th dose independent rect. 16 2
351 351.39 radiation 20.0 30 < th dose independent rect. 7 1
355 351.44 atmosphere 995.0 90 > th dose dependent rect. 8 9
415 351.79 temperature 15.0 10 > th dose independent rect. 8 23
419 351.81 atmosphere 995.0 14400 > th dose independent rect. 7 2
422 351.84 humidity 50.0 4320 > th dose independent rect. 14 1
432 351.97 radiation 40.0 90 < th dose independent rect. 8 9
445 352.20 precipitation 0.1 10 < th dose independent rect. 7 1
446 352.20 precipitation 0.1 10 < th dose dependent rect. 7 1
459 352.29 radiation 40.0 10 < th dose independent rect. 7 1
472 352.41 temperature 10.0 10 > th dose independent rect. 7 1
474 352.41 temperature 30.0 10 < th dose independent rect. 7 1
475 352.41 humidity 50.0 10 > th dose independent rect. 7 1
477 352.41 atmosphere 995.0 10 > th dose independent rect. 7 1
493 352.44 humidity 50.0 90 > th dose dependent rect. 6 2
500 352.46 wind 9.0 1440 < th dose independent rect. 8 1
503 352.46 temperature 10.0 1440 > th dose independent rect. 8 1
508 352.46 humidity 50.0 1440 > th dose independent rect. 8 1
510 352.46 atmosphere 995.0 1440 > th dose independent rect. 8 1
513 352.46 atmosphere 1015.0 1440 < th dose independent rect. 8 1
514 352.46 temperature 10.0 1440 > th dose independent rect. 9 23
520 352.50 wind 9.0 30 < th dose independent rect. 8 23
533 352.56 radiation 1.0 90 > th dose dependent rect. 6 1
539 352.63 humidity 90.0 10 < th dose independent rect. 1 8
546 352.68 radiation 1.0 90 > th dose independent rect. 4 4
556 352.69 wind 1.0 4320 < th dose independent rect. 21 1
576 352.75 precipitation 0.1 10 < th dose independent rect. 8 23
577 352.75 precipitation 0.1 10 < th dose dependent rect. 8 23
612 352.86 atmosphere 1000.0 90 < th dose independent rect. 4 12
632 352.93 humidity 90.0 10 < th dose independent rect. 7 1
651 352.99 atmosphere 995.0 90 > th dose dependent rect. 8 22
656 353.05 humidity 80.0 90 > th dose independent rect. 6 2
695 353.22 wind 1.0 10 > th dose independent rect. 8 10
698 353.23 atmosphere 1000.0 10 < th dose independent rect. 4 8
731 353.34 radiation 30.0 10 > th dose independent rect. 7 2
776 353.36 wind 9.0 90 > th dose independent rect. 17 2
780 353.36 radiation 1.0 90 > th dose dependent rect. 18 13
795 353.38 radiation 40.0 30 < th dose dependent rect. 7 1
796 353.38 wind 9.0 90 > th dose dependent rect. 17 2
819 353.45 wind 9.0 10 > th dose dependent rect. 17 1
834 353.51 wind 1.0 4320 > th dose independent rect. 21 1
851 353.57 radiation 40.0 30 < th dose independent rect. 18 15
861 353.61 atmosphere 1000.0 90 < th dose independent rect. 4 16
867 353.64 atmosphere 995.0 30 > th dose independent rect. 18 15
870 353.65 temperature 10.0 30 > th dose independent rect. 9 9
872 353.65 atmosphere 1015.0 30 < th dose independent rect. 9 9
873 353.65 temperature 10.0 30 > th dose independent rect. 18 15
874 353.65 humidity 50.0 30 > th dose independent rect. 18 15
879 353.67 precipitation 0.1 30 < th dose independent rect. 9 9
881 353.67 precipitation 0.1 30 < th dose dependent rect. 9 9
914 353.77 wind 1.0 10 > th dose independent rect. 7 1
921 353.78 wind 9.0 30 < th dose independent rect. 18 15
925 353.79 atmosphere 1000.0 90 > th dose independent rect. 3 14
964 353.84 humidity 90.0 90 > th dose dependent rect. 6 1
966 353.85 atmosphere 1000.0 90 < th dose independent sin 3 NA
982 353.87 radiation 1.0 90 > th dose dependent rect. 4 3