BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0567100 Os10g0567100|AK063367
(542 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537 720 0.0
AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540 112 6e-25
AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560 75 1e-13
AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538 73 4e-13
>AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537
Length = 536
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/523 (67%), Positives = 417/523 (79%), Gaps = 8/523 (1%)
Query: 18 SFSCCFTMGIGRRYG---RIKVYAVLGDDEAQHAKNNMRGALFHVDNPGPMAPIAKGNFL 74
SFS + + R+ G +V+AV GD+ K + LF V++P AP KG FL
Sbjct: 16 SFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFL 75
Query: 75 DVNQALEVVRFGIQYCDWRARQDLLTIMVLHNKVVEVLKSLAIEFKSNGTXXXXXXXXXX 134
DVNQA+EV RF IQY DWRARQDLLTIM+LH+KVV+VL LA E+KS GT
Sbjct: 76 DVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQE 135
Query: 135 XXXXXHNQVHLSETRASSALDKLAQADNLVNDRLLQDGGSSASIDNYVSLASRTSSASRF 194
H QVH+SE R S+ALDKLA + LVNDRLL G +D S S T+SA
Sbjct: 136 ELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLP-GRVVTELDKPSS--STTASAVEL 192
Query: 195 VNKKTLR--PSLDVSGPVQPYNPNLKNFWYPVVFSGDLKDDTMVPIDCFEEQWVIFRGKD 252
+KT SL+VSGPV PY+P+LKNFWYPV F+ DLK DTMVPI+CFE+ WVIFRG+D
Sbjct: 193 DREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGED 252
Query: 253 GRPGCVQNTCAHRACPLHLGSVSEGRIQCPFHGWEYSTDGKCEKMPATKLLNVRIRSLPC 312
G+PGCV+NTCAHRACPL LG+V+EGRIQCP+HGWEYSTDG+C+KMP+TKLL V+I+SLPC
Sbjct: 253 GKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPC 312
Query: 313 FEQEGMVWIWPGDGTPESTIPSLQPPSGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAH 372
EQEGM+WIWPGD P +PSLQPPSGF IHAE+VM+LPVEHGLLLDNLLD+AHAPF H
Sbjct: 313 LEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTH 372
Query: 373 TSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTTGISKPGKLEGKSIK 432
TSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLST GISKPGKLEGKS +
Sbjct: 373 TSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQ 432
Query: 433 QCSTHLHQLHICLPSSRNKTRMLYQMSLNFAPWLKHIPFMHILWSHFGEKVLNEDLRLVL 492
QC+THLHQLH+CLPSS+NKTR+LY+MSL+FAP LK++PFM LW HF E+VLNEDLRLVL
Sbjct: 433 QCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVL 492
Query: 493 GQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGANRLPFN 535
GQQERM+NGAN+WN PV+YDKLG+RYRLWR+A++RG ++LPF+
Sbjct: 493 GQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFS 535
>AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540
Length = 539
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 43/336 (12%)
Query: 221 WYPVVFSGDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQ 280
WYP+ + ++ +D + + ++ Q V+++ +G C ++ C HR L G + +GR++
Sbjct: 88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147
Query: 281 CPFHGWEYSTDGKCEKMP----ATKLLNVR-IRSLPCFEQEGMVWIWPGDGTPEST---- 331
C +HGW++ +GKC K+P + K+ +++ + +G+VW+W TP +
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKLP 207
Query: 332 -IPSLQPPSGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAHTST--FAKGWSVPSLVKF 388
+ P F I ELP +H +LL+NL+D AH P +H T AK LV
Sbjct: 208 WFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLVFE 265
Query: 389 LTPAS--GLQGYWDPYPID------MEFRPPCMVLSTTGISKPGKLEGKSIKQCSTHLHQ 440
+T S G G W + F PC++ + + EGK +
Sbjct: 266 VTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNNR------EFEGKD--GVKNYFSG 317
Query: 441 LHICLPSSRNKTRMLYQMSLNFAPWLKHIPFMHIL----WSHFGEKVLNEDLRLVLGQQE 496
L +C P+ + K+ ++ + + K P + +L W KV +D+ + Q E
Sbjct: 318 LFLCRPTGQGKSMLIVRFGVT-----KRSPLVSVLPQWFWHQNACKVFEQDMGFLSSQNE 372
Query: 497 RMIN----GANVWNWPVSYDKLGIRYRLWRDAIERG 528
++ +++ S D YR W D + G
Sbjct: 373 VLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHG 408
>AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560
Length = 559
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 139/374 (37%), Gaps = 88/374 (23%)
Query: 221 WYPVVFSGDLKD-----------DTMVPIDCFEEQWVIFRGKDGRPGCVQNTCAHRACPL 269
WYPV+ DL D +V D E+QW + + +TC HR PL
Sbjct: 85 WYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKV----------MDDTCPHRLAPL 134
Query: 270 HLGSVSE-GRIQCPFHGWEYSTDGKCEKMPAT--------KLLNVRIRSLPCFEQEGMVW 320
G + + GR+QC +HGW ++ G C+ +P + P Q ++W
Sbjct: 135 SDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIW 194
Query: 321 IWPG---------DGTPESTIPSLQPPSGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFA 371
WP + IP L+ PS + ++P + +L++NL+D AH P+A
Sbjct: 195 FWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGN--RDIPYGYDVLVENLMDPAHVPYA 252
Query: 372 HTSTF----AKGWSVPSLVK-FLTPASGLQGYW---------DPYPIDME---------- 407
H KG + + P + LQ P I+++
Sbjct: 253 HYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSK 312
Query: 408 -------FRPPCMVLSTTGI------SKPGKLEGKSIKQCSTHLHQLHICLPSSRNKTRM 454
F PC+ S+T P L + IC+P S ++R+
Sbjct: 313 QEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRL 372
Query: 455 LYQMSLNFAPWLKHIPFMHILWSHFGEK-VLNEDLRLVLGQQERMINGANVWNW------ 507
++ NF ++ I + H G+ +L+ DL L L +ER I NW
Sbjct: 373 IWTFPRNFGVFIDKIVPRWVF--HIGQNTILDSDLHL-LHVEERKILERGPENWQKACFI 429
Query: 508 PVSYDKLGIRYRLW 521
P D + +R W
Sbjct: 430 PTKSDANVVTFRRW 443
>AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538
Length = 537
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 124/312 (39%), Gaps = 38/312 (12%)
Query: 218 KNFWYPVVFSGDLKDDTMVPIDCFEEQWVI-FRGKDGRPGCVQNTCAHRACPLHLGSVSE 276
++ WYPV DL + P V+ F D + + C HR PL G + E
Sbjct: 85 RDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDE 144
Query: 277 -GRIQCPFHGWEYSTDGKCEKMPATKLLNVRIRSL----------PCFEQEGMVWIWPGD 325
G +QC +HGW + G C ++P R++ P +G++++WP D
Sbjct: 145 NGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWP-D 203
Query: 326 GTPESTIPSLQPP-----------SGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAH-- 372
S++PP S TI ++ + L++N+ D +H FAH
Sbjct: 204 ENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFY----GYDTLMENVSDPSHIDFAHHK 259
Query: 373 -TSTFAKGWSVPSLVKFLTPASGLQGYWDPYP-IDMEFRPPCMVLSTTGISKPGKLEGKS 430
T + +P V+ P G QG D P I +F PC ++ + + G
Sbjct: 260 VTGRRDRAKPLPFKVESSGPW-GFQGANDDSPRITAKFVAPCYSMNKIELDAKLPIVGNQ 318
Query: 431 ---IKQCSTHLHQLHICLPSSRNKTRMLYQMSLNFAPWLKHIPFMHILWSHFGEKVLNED 487
I CS ++ S R +Q S+ W + +P + W+ V + D
Sbjct: 319 KWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWT--SNLVYDGD 376
Query: 488 LRLVLGQQERMI 499
+ ++ GQ++ +
Sbjct: 377 MIVLQGQEKVFL 388
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,421,704
Number of extensions: 545761
Number of successful extensions: 959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 4
Length of query: 542
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 439
Effective length of database: 8,282,721
Effective search space: 3636114519
Effective search space used: 3636114519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)