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Os10g0567400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rieske [2Fe-2S] region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0243) R2 : 0.935
β1 : -0.762 (0.0886) R2dD : 0.011 R2D : 0.00817
β2 : 6.24 (0.0785) R2dC : 1.68 R2C : 0.121
β3 : 3.89 (0.071) R2dE : 0.788 R2E : -0.763
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.507 (0.0516) R2dN8 : 0.0197 R2N8 : 0.00623
σ : 0.452
deviance : 94.31
__
_____
C
peak time of C : 10.8
E
wheather : radiation
threshold : 0.04
memory length : 282
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.26
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.52 0.457 12.7 -0.774 6.21 3.88 -0.0501 0.247 -0.527 10.8 0.04669 279 6.02 --
94.24 0.452 12.7 -0.795 6.22 3.89 -0.25 -- -0.509 10.8 0.05 280 6.19 --
94.09 0.452 12.7 -0.8 6.23 3.88 -- 0.29 -0.502 10.8 0.04002 281 6.22 --
94.31 0.452 12.7 -0.762 6.24 3.89 -- -- -0.507 10.8 0.04 282 6.26 --
164.24 0.597 12.8 -1.04 -- 4.68 -- 0.818 -0.633 -- 54.17 589 2.81 --
159.46 0.592 12.7 -0.922 4.8 -- 0.269 -- -0.642 7.94 -- -- -- --
159.68 0.592 12.7 -0.915 4.8 -- -- -- -0.642 7.94 -- -- -- --
159.68 0.589 12.8 -0.915 -- 4.79 -- -- -0.642 -- 89.04 582 2.91 --
109.92 0.488 12.7 -- 6.28 3.88 -- -- -0.456 10.8 0.04413 282 6.38 --
1412.53 1.76 12.8 -0.865 -- -- -- -- -0.579 -- -- -- -- --
181.74 0.631 12.7 -- 4.79 -- -- -- -0.54 7.95 -- -- -- --
181.74 0.628 12.8 -- -- 4.79 -- -- -0.54 -- 93.62 590 2.96 --
1432.25 1.77 12.8 -- -- -- -- -- -0.483 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.41 radiation 1.0 270 > th dose independent rect. 9 6
2 94.95 temperature 10.0 270 > th dose independent rect. 9 6
3 94.95 atmosphere 1015.0 270 < th dose independent rect. 9 6
4 94.95 precipitation 0.1 270 < th dose independent rect. 9 6
5 94.95 temperature 10.0 270 > th dose independent rect. 15 18
6 94.95 precipitation 0.1 270 < th dose dependent rect. 9 6
7 95.28 wind 9.0 270 < th dose independent rect. 9 6
8 95.77 atmosphere 995.0 270 > th dose independent rect. 9 6
9 96.36 wind 9.0 270 < th dose independent rect. 15 18
10 96.50 wind 1.0 270 > th dose independent rect. 9 6
11 97.31 humidity 50.0 270 > th dose independent rect. 9 6
12 97.34 radiation 1.0 270 > th dose independent rect. 10 4
18 97.55 radiation 40.0 270 < th dose independent rect. 15 18
27 97.88 precipitation 0.1 270 < th dose independent rect. 15 18
28 97.88 precipitation 0.1 270 < th dose dependent rect. 15 18
31 97.98 wind 7.0 270 < th dose independent rect. 19 9
41 98.23 humidity 50.0 270 > th dose independent rect. 14 19
42 98.24 atmosphere 995.0 270 > th dose independent rect. 15 18
45 98.39 temperature 10.0 270 > th dose independent rect. 19 9
46 98.39 temperature 30.0 270 < th dose independent rect. 19 9
47 98.39 humidity 50.0 270 > th dose independent rect. 19 9
48 98.39 atmosphere 995.0 270 > th dose independent rect. 19 9
49 98.39 radiation 1.0 270 < th dose independent rect. 19 9
54 98.39 temperature 10.0 270 > th dose independent rect. 4 15
55 98.39 atmosphere 1015.0 270 < th dose independent rect. 4 15
56 98.39 radiation 10.0 270 < th dose dependent rect. 19 9
70 99.16 radiation 1.0 270 < th dose dependent sin 12 NA
71 99.45 temperature 10.0 10 > th dose dependent rect. 16 18
78 99.76 atmosphere 1015.0 270 < th dose independent rect. 15 18
87 100.06 wind 9.0 270 < th dose independent rect. 4 15
90 100.30 temperature 20.0 30 > th dose independent rect. 16 18
92 100.35 temperature 10.0 270 > th dose dependent rect. 9 5
93 100.37 humidity 50.0 30 > th dose independent rect. 16 18
99 100.50 precipitation 0.1 270 < th dose independent rect. 19 9
101 100.50 precipitation 0.1 270 < th dose dependent rect. 19 9
107 100.88 temperature 10.0 270 > th dose dependent rect. 10 3
130 101.36 temperature 20.0 270 > th dose independent rect. 14 7
133 101.47 temperature 10.0 1440 > th dose independent rect. 11 6
137 101.47 temperature 10.0 1440 > th dose independent rect. 17 18
141 101.51 humidity 90.0 270 < th dose independent rect. 10 4
142 101.53 atmosphere 995.0 30 > th dose independent rect. 16 18
152 101.61 precipitation 0.1 270 < th dose independent rect. 4 15
153 101.61 precipitation 0.1 270 < th dose dependent rect. 4 15
158 101.67 temperature 10.0 30 > th dose independent rect. 10 6
160 101.67 atmosphere 1015.0 30 < th dose independent rect. 10 6
161 101.67 temperature 10.0 30 > th dose independent rect. 16 18
165 101.70 precipitation 0.1 10 < th dose independent rect. 10 6
167 101.70 precipitation 0.1 10 < th dose dependent rect. 10 6
177 101.95 wind 9.0 30 < th dose independent rect. 10 6
202 102.16 wind 1.0 270 > th dose independent rect. 14 8
204 102.25 atmosphere 1015.0 30 < th dose independent rect. 16 18
205 102.27 radiation 1.0 30 > th dose independent rect. 10 6
214 102.62 wind 9.0 30 < th dose independent rect. 16 18
220 102.78 wind 1.0 30 > th dose independent rect. 10 6
223 102.82 precipitation 0.1 10 < th dose independent rect. 16 18
224 102.82 precipitation 0.1 10 < th dose dependent rect. 16 18
231 102.96 humidity 50.0 10 > th dose independent rect. 10 6
232 102.98 radiation 1.0 270 > th dose independent rect. 16 16
247 103.29 temperature 10.0 270 > th dose dependent rect. 8 7
248 103.30 atmosphere 995.0 30 > th dose independent rect. 10 6
263 103.74 atmosphere 1015.0 270 < th dose independent rect. 14 7
284 104.15 radiation 40.0 270 < th dose independent rect. 14 7
287 104.23 temperature 10.0 270 > th dose independent rect. 14 7
288 104.23 temperature 10.0 270 > th dose independent rect. 21 17
289 104.23 atmosphere 995.0 270 > th dose independent rect. 21 17
295 104.42 wind 9.0 270 < th dose independent rect. 10 16
296 104.47 wind 9.0 270 < th dose independent rect. 2 8
297 104.47 temperature 10.0 270 > th dose independent rect. 2 8
298 104.47 atmosphere 995.0 270 > th dose independent rect. 2 8
299 104.47 atmosphere 1015.0 270 < th dose independent rect. 2 8
300 104.47 temperature 10.0 270 > th dose independent rect. 10 16
305 104.58 wind 9.0 270 < th dose independent rect. 21 17
311 104.70 temperature 10.0 270 > th dose dependent rect. 14 9
312 104.71 humidity 50.0 270 > th dose independent rect. 21 17
313 104.73 radiation 1.0 270 < th dose independent sin 12 NA
316 104.77 humidity 50.0 270 > th dose independent rect. 2 8
323 104.93 radiation 1.0 270 > th dose independent sin 12 NA
327 105.05 precipitation 0.1 270 < th dose independent rect. 10 16
328 105.05 precipitation 0.1 270 < th dose dependent rect. 10 16
335 105.23 wind 9.0 270 < th dose independent rect. 14 7
336 105.25 precipitation 0.1 270 < th dose independent rect. 2 8
337 105.25 precipitation 0.1 270 < th dose dependent rect. 2 8
349 105.41 precipitation 0.1 270 < th dose independent rect. 21 17
350 105.41 precipitation 0.1 270 < th dose dependent rect. 21 17
383 106.22 atmosphere 995.0 270 > th dose independent rect. 4 15
422 107.04 precipitation 0.1 270 < th dose independent rect. 14 7
423 107.04 precipitation 0.1 270 < th dose dependent rect. 14 7
446 107.38 wind 9.0 270 < th dose independent rect. 9 18
447 107.38 wind 9.0 270 < th dose dependent rect. 10 4
453 107.54 wind 9.0 270 < th dose independent rect. 3 6
454 107.54 temperature 10.0 270 > th dose independent rect. 3 6
456 107.54 humidity 50.0 270 > th dose independent rect. 3 6
457 107.54 atmosphere 995.0 270 > th dose independent rect. 3 6
458 107.54 atmosphere 1015.0 270 < th dose independent rect. 3 6
459 107.54 temperature 10.0 270 > th dose independent rect. 9 18
465 107.65 precipitation 0.1 270 < th dose independent rect. 9 18
466 107.65 precipitation 0.1 270 < th dose dependent rect. 9 18
486 108.06 precipitation 0.1 270 < th dose independent rect. 3 6
487 108.06 precipitation 0.1 270 < th dose dependent rect. 3 6
493 108.17 atmosphere 995.0 270 > th dose independent rect. 14 7
509 108.44 temperature 30.0 270 < th dose independent rect. 3 6
562 108.97 temperature 30.0 30 < th dose independent rect. 16 18
566 109.00 temperature 30.0 90 < th dose dependent rect. 21 8
573 109.05 humidity 50.0 270 > th dose independent rect. 14 7
582 109.15 temperature 30.0 270 < th dose independent rect. 2 8
625 109.43 radiation 40.0 270 < th dose dependent rect. 15 17
631 109.53 wind 1.0 270 > th dose independent rect. 10 16
633 109.56 wind 1.0 270 > th dose independent rect. 22 16
642 109.61 temperature 15.0 10 > th dose independent rect. 23 17
659 109.85 radiation 1.0 90 < th dose dependent rect. 21 17
676 110.02 wind 1.0 270 > th dose independent rect. 20 8
682 110.10 radiation 40.0 270 < th dose independent rect. 3 6
713 110.21 radiation 1.0 90 < th dose dependent rect. 21 14
717 110.23 wind 9.0 270 < th dose dependent rect. 9 6
759 110.52 precipitation 0.1 10 < th dose independent rect. 16 7
760 110.52 precipitation 0.1 10 < th dose dependent rect. 16 7
776 110.65 wind 1.0 270 > th dose independent rect. 9 18
777 110.67 radiation 40.0 270 < th dose independent rect. 2 8
791 110.73 temperature 10.0 10 > th dose dependent rect. 16 7
804 110.80 radiation 40.0 10 < th dose dependent rect. 16 7
818 110.95 radiation 30.0 10 < th dose independent rect. 16 7
830 111.04 temperature 10.0 10 > th dose independent rect. 16 7
832 111.04 atmosphere 1010.0 10 < th dose independent rect. 16 7
874 111.30 atmosphere 995.0 10 > th dose independent rect. 16 7
875 111.30 atmosphere 995.0 90 > th dose independent rect. 16 7
903 111.46 wind 9.0 270 < th dose dependent rect. 3 7
967 111.76 atmosphere 995.0 270 > th dose independent rect. 10 16
993 111.88 temperature 10.0 1440 > th dose independent rect. 17 7
996 111.88 radiation 30.0 1440 < th dose independent rect. 17 7