BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0567400 Os10g0567400|AF284781
(541 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0567400 Rieske [2Fe-2S] region domain containing protein 1071 0.0
Os10g0567100 Similar to Chlorophyll b synthase (Fragment) 920 0.0
Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 pr... 114 3e-25
Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment) 70 3e-12
>Os10g0567400 Rieske [2Fe-2S] region domain containing protein
Length = 541
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/541 (95%), Positives = 517/541 (95%)
Query: 1 MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD 60
MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD
Sbjct: 1 MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD 60
Query: 61 PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS 120
PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS
Sbjct: 61 PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS 120
Query: 121 IGTXXXXXXXXXXXXXXXHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC 180
IGT HNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC
Sbjct: 121 IGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC 180
Query: 181 TSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCF 240
TSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCF
Sbjct: 181 TSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCF 240
Query: 241 EEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTK 300
EEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTK
Sbjct: 241 EEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTK 300
Query: 301 MLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGXXXXX 360
MLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHG
Sbjct: 301 MLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDN 360
Query: 361 XXXXAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGIS 420
AHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGIS
Sbjct: 361 LLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGIS 420
Query: 421 KPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAE 480
KPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAE
Sbjct: 421 KPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAE 480
Query: 481 KVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESG 540
KVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESG
Sbjct: 481 KVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESG 540
Query: 541 S 541
S
Sbjct: 541 S 541
>Os10g0567100 Similar to Chlorophyll b synthase (Fragment)
Length = 542
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/540 (82%), Positives = 469/540 (86%), Gaps = 3/540 (0%)
Query: 5 ASLSLLPHLLIKPS--FRCCSRKGVGR-YGGIKVYAVLGDDGADYAKNNAWEALFHVDDP 61
++SLLPHLL+KPS F CC G+GR YG IKVYAVLGDD A +AKNN ALFHVD+P
Sbjct: 3 TTVSLLPHLLVKPSSSFSCCFTMGIGRRYGRIKVYAVLGDDEAQHAKNNMRGALFHVDNP 62
Query: 62 GPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKSI 121
GP PIAKG FLDVNQALEVVRF IQYCDWRARQDLLTIMVLHNKVVEVL LA EFKS
Sbjct: 63 GPMAPIAKGNFLDVNQALEVVRFGIQYCDWRARQDLLTIMVLHNKVVEVLKSLAIEFKSN 122
Query: 122 GTXXXXXXXXXXXXXXXHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECT 181
GT HNQVHLSETR SSALDKLAQ + LVNDRLLQDGGSSAS
Sbjct: 123 GTLRKELAELQEELAKAHNQVHLSETRASSALDKLAQADNLVNDRLLQDGGSSASIDNYV 182
Query: 182 SLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFE 241
SLA TSSASR VNKK R SL+VSGPVQPYNP+LKNFWYPV FS DLKDDTMVPIDCFE
Sbjct: 183 SLASRTSSASRFVNKKTLRPSLDVSGPVQPYNPNLKNFWYPVVFSGDLKDDTMVPIDCFE 242
Query: 242 EQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKM 301
EQWVIFRGKDGRPGCV NTCAHRACPLHLGSV+EGRIQCP+HGWEYSTDGKCEKMP+TK+
Sbjct: 243 EQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQCPFHGWEYSTDGKCEKMPATKL 302
Query: 302 LNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGXXXXXX 361
LNVRIRSLPCFEQEGMVWIWPG+ P+STIPSL PPSGFTIHAE+VMELPVEHG
Sbjct: 303 LNVRIRSLPCFEQEGMVWIWPGDGTPESTIPSLQPPSGFTIHAEMVMELPVEHGLLLDNL 362
Query: 362 XXXAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISK 421
AHAPF HTSTFAKGWSVPSLVKFLTP+SGLQGYWDPYPIDMEFRPPCMVLST GISK
Sbjct: 363 LDIAHAPFAHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTTGISK 422
Query: 422 PGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEK 481
PGKLEGKS KQCSTHLHQLHICLPSSRNKTR+LY+MSL+FAPW+KH+PFMHILWSHF EK
Sbjct: 423 PGKLEGKSIKQCSTHLHQLHICLPSSRNKTRMLYQMSLNFAPWLKHIPFMHILWSHFGEK 482
Query: 482 VLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPFSNQSESGS 541
VLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERG +RLPF+NQSESGS
Sbjct: 483 VLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGANRLPFNNQSESGS 542
>Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 precursor
Length = 539
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 152/334 (45%), Gaps = 38/334 (11%)
Query: 220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQ 279
WYP+ + ++ DD +P+ F+ Q V++R G C + C HR L G + +G+++
Sbjct: 89 WYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGKLE 148
Query: 280 CPYHGWEYSTDGKCEKMP-----STKMLNVRIRSLPCFEQEGMVWIW-PGNDPP-KSTIP 332
C YHGW++ +GKC K+P + N RS + +G+VW W G +PP + +P
Sbjct: 149 CLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYEVRDSQGVVWAWMSGTNPPDERKLP 208
Query: 333 SLLPPS--GFTIHAEIVMELPVEHGXXXXXXXXXAHAPFTHTST--FAKGWSVPSLVKFL 388
P + GFT V ELP +H AH P +H T AK L +
Sbjct: 209 WFEPYARPGFT-DLSTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDAQPLFFEV 267
Query: 389 TPSS--GLQGYW----DPYPID-MEFRPPCMVLSTIG-ISKPGKLEGKSTKQC-STHLHQ 439
T + G GYW P+ + + F PC++ +T+ + K GK +QC S H
Sbjct: 268 TERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLEFVDKDGK------EQCFSAHF-- 319
Query: 440 LHICLPSSRNKTRLLYRM-SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMI 498
+C P+ + K+ LL R S +P +K +P + A KV +D+ + Q E ++
Sbjct: 320 --LCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYF--HQNACKVFEQDMGFLSSQNEVLL 375
Query: 499 N----GANVWNWPVSYDKLGIRYRLWRDAIERGV 528
++ S D YR W D G+
Sbjct: 376 REKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGM 409
>Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment)
Length = 529
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 136/346 (39%), Gaps = 50/346 (14%)
Query: 217 KNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRG-KDGRPGCVMNTCAHRACPLHLGSVNE 275
++ WYPV+ DL P VI++ K G + + C HR PL G ++E
Sbjct: 79 RDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGRIDE 138
Query: 276 -GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSL----------PCFEQEGMVWIWP-- 322
G +QC YHGW + G C ++P +++ P +G++++WP
Sbjct: 139 TGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVWPDE 198
Query: 323 -GNDPPKSTIPSLLP-----PSGFTIHAEIVMELPVEHGXXXXXXXXXAHAPFTHTSTFA 376
G + +T P +LP P+ T+ I +L + +H F H
Sbjct: 199 NGWEKATATKPPMLPKEFEDPAFSTV--TIQRDLYYGYDTLMENVSDPSHIEFAHHKVTG 256
Query: 377 KGWSVPSLVKFLTPSSGLQGY-----WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTK 431
+ L F SSG GY +P I F PC L+ I I KL +
Sbjct: 257 RRDRARPL-PFKMESSGAWGYSGSNSGNPR-ISATFVAPCYALNKIEIDT--KLPIFGDQ 312
Query: 432 QCSTHLHQLHICLPSSRNKT-----RLLYRMSLDFAPWIKHVPFMHILWSHFAEKVLNED 486
+ + +I + + ++ R ++ S+ W + VP + W+ + V + D
Sbjct: 313 KWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPGKAWWQLVPRWYEHWT--SNLVYDGD 370
Query: 487 LRLVLGQQERMINGA------------NVWNWPVSYDKLGIRYRLW 520
+ ++ GQ++ ++ + + P D+ + +R W
Sbjct: 371 MIVLQGQEKIFLSASKESSADINQQYTKITFTPTQADRFVLAFRAW 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,869,417
Number of extensions: 867329
Number of successful extensions: 1957
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1955
Number of HSP's successfully gapped: 4
Length of query: 541
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 435
Effective length of database: 11,501,117
Effective search space: 5002985895
Effective search space used: 5002985895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)