Os03g0805700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rieske [2Fe-2S] region domain containing protein.
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Os03g0805700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rieske [2Fe-2S] region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.73 | 0.464 | 11 | -0.782 | 2.31 | 1.12 | 0.871 | 2.43 | -0.524 | 8.54 | 23.8 | 1393 | -- | -- |
| 103.03 | 0.473 | 10.9 | -0.377 | 2.3 | 0.796 | 0.894 | -- | -0.428 | 8.55 | 25.47 | 1500 | -- | -- |
| 100.01 | 0.466 | 11 | -0.763 | 2.3 | 1.16 | -- | 2.55 | -0.53 | 8.49 | 23.58 | 1330 | -- | -- |
| 105.32 | 0.478 | 10.9 | -0.376 | 2.31 | 0.8 | -- | -- | -0.441 | 8.54 | 25.1 | 1500 | -- | -- |
| 308.67 | 0.818 | 11 | -0.295 | -- | 2.54 | -- | 1.69 | -0.284 | -- | 43.96 | 628 | -- | -- |
| 111.41 | 0.495 | 11 | -0.645 | 2.31 | -- | 0.906 | -- | -0.605 | 8.61 | -- | -- | -- | -- |
| 114.05 | 0.5 | 11 | -0.617 | 2.31 | -- | -- | -- | -0.606 | 8.57 | -- | -- | -- | -- |
| 310.8 | 0.821 | 10.9 | 0.0011 | -- | 2.57 | -- | -- | -0.204 | -- | 41.21 | 619 | -- | -- |
| 108.78 | 0.486 | 10.9 | -- | 2.25 | 0.904 | -- | -- | -0.383 | 8.6 | 25.07 | 1565 | -- | -- |
| 412.85 | 0.949 | 11 | -0.609 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 124.08 | 0.521 | 11 | -- | 2.3 | -- | -- | -- | -0.537 | 8.59 | -- | -- | -- | -- |
| 310.8 | 0.821 | 10.9 | -- | -- | 2.57 | -- | -- | -0.205 | -- | 49.43 | 619 | -- | -- |
| 422.62 | 0.96 | 11 | -- | -- | -- | -- | -- | -0.517 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.29 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 6 | 91.28 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 25 | 92.91 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 55 | 94.58 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 57 | 94.65 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 82 | 95.71 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 94 | 96.07 | temperature | 25.0 | 10 | < th | dose dependent | sin | 20 | NA |
| 97 | 96.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 107 | 96.24 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 118 | 96.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 139 | 96.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 140 | 96.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 141 | 96.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 142 | 96.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 144 | 96.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 146 | 96.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 168 | 96.88 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 174 | 96.90 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 181 | 96.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 203 | 97.03 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 224 | 97.11 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 240 | 97.22 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 241 | 97.23 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 269 | 97.36 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 276 | 97.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 277 | 97.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 334 | 97.55 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 345 | 97.57 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 17 |
| 357 | 97.62 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 366 | 97.65 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 414 | 97.80 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 429 | 97.84 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 441 | 97.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 457 | 97.92 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 469 | 97.96 | temperature | 25.0 | 720 | < th | dose independent | sin | 1 | NA |
| 515 | 98.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 531 | 98.17 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 558 | 98.22 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 560 | 98.22 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 598 | 98.28 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 602 | 98.29 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 647 | 98.37 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 665 | 98.40 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 667 | 98.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 668 | 98.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 702 | 98.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 713 | 98.46 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 733 | 98.49 | temperature | 25.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 746 | 98.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 781 | 98.55 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 809 | 98.58 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 815 | 98.58 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 855 | 98.63 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 925 | 98.72 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 932 | 98.73 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 955 | 98.75 | temperature | 30.0 | 30 | < th | dose independent | rect. | 24 | 18 |
| 996 | 98.78 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 20 |