BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0805700 Os03g0805700|Os03g0805700
(543 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0805700 Rieske [2Fe-2S] region domain containing protein 986 0.0
Os03g0805900 Rieske [2Fe-2S] region domain containing protein 607 e-174
Os03g0806350 272 5e-73
Os03g0806300 246 3e-65
Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment) 220 2e-57
Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 pr... 115 1e-25
Os03g0805800 Pheophorbide a oxygenase domain containing pro... 100 4e-21
>Os03g0805700 Rieske [2Fe-2S] region domain containing protein
Length = 543
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/543 (90%), Positives = 490/543 (90%)
Query: 1 MAPLSLLLRSGARPASLPLRVDGAASQRIASLAAPPRRPWIGRGVALRLXXXXXXXXXXX 60
MAPLSLLLRSGARPASLPLRVDGAASQRIASLAAPPRRPWIGRGVALRL
Sbjct: 1 MAPLSLLLRSGARPASLPLRVDGAASQRIASLAAPPRRPWIGRGVALRLPTSVSAVSAAE 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXFDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDGGG 120
FDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDGGG
Sbjct: 61 TETETPPVAEEVRAPAAGEERFDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDGGG 120
Query: 121 EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSK 180
EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSK
Sbjct: 121 EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSK 180
Query: 181 ACVASYPSVVQNNILWFYPRTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYGYRN 240
ACVASYPSVVQNNILWFYPRTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYGYRN
Sbjct: 181 ACVASYPSVVQNNILWFYPRTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYGYRN 240
Query: 241 AQAILLRNGHIGMQLDILCRGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFLSIQ 300
AQAILLRNGHIGMQLDILCRGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFLSIQ
Sbjct: 241 AQAILLRNGHIGMQLDILCRGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFLSIQ 300
Query: 301 GENWGHFRFIAPCTINRSELPLETLAHFDQEKQQQQPQGMLVFLCIPVAPGRSRVIWVFP 360
GENWGHFRFIAPCTINRSELPLETLAHFDQEKQQQQPQGMLVFLCIPVAPGRSRVIWVFP
Sbjct: 301 GENWGHFRFIAPCTINRSELPLETLAHFDQEKQQQQPQGMLVFLCIPVAPGRSRVIWVFP 360
Query: 361 QSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTLSDNMI 420
QSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTLSDNMI
Sbjct: 361 QSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTLSDNMI 420
Query: 421 ITFRNWFRKYCKHQVGWATPMVNQLPTTPTKDQLMERYWSHVMQCTSCSAALKWMRAMEV 480
ITFRNWFRKYCKHQVGWATPMVNQLPTTPTKDQLMERYWSHVMQCTSCSAALKWMRAMEV
Sbjct: 421 ITFRNWFRKYCKHQVGWATPMVNQLPTTPTKDQLMERYWSHVMQCTSCSAALKWMRAMEV 480
Query: 481 ALQVASVAVVGFLAAGKGTTXXXXXXXXXXXXXXXXXXXXXSRWLANFIEKSFYFQDYVH 540
ALQVASVAVVGFLAAGKGTT SRWLANFIEKSFYFQDYVH
Sbjct: 481 ALQVASVAVVGFLAAGKGTTVVTSAVQRAAVVAAAALCFAASRWLANFIEKSFYFQDYVH 540
Query: 541 AYK 543
AYK
Sbjct: 541 AYK 543
>Os03g0805900 Rieske [2Fe-2S] region domain containing protein
Length = 525
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 325/548 (59%), Positives = 364/548 (66%), Gaps = 28/548 (5%)
Query: 1 MAPLSLLLRSGARPASLPLR--VDGAASQRIASLAAPPRRPWIGRGVALRLXXXXXXXXX 58
MAP+SL L S R SLP R V ++ RI P RR WI A R
Sbjct: 1 MAPVSLHLLSLTR-LSLPFRDTVTNPSTPRIP----PWRRQWISPTDARR-RRLSMPVSA 54
Query: 59 XXXXXXXXXXXXXXXXXXXXXXXFDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDG 118
FDWLDQWYPVAPV DLD RKPHGKMV+G+ VV WFDG
Sbjct: 55 VAAEAPLPRAVDEKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDG 114
Query: 119 GG-EWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHK 177
GG EWRVVDDACPHRLAPLSEGRVDGKG LQCAYHGWCFDGHGSCQFIPQAPALGPPVHK
Sbjct: 115 GGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHK 174
Query: 178 NSKACVASYPSVVQNNILWFYPRTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYG 237
NSKACVASYPSVVQNNILWFYPR+EPEY+++LQRKRPPY +LDDPS GVRD YG
Sbjct: 175 NSKACVASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYG 234
Query: 238 YRNAQAILLRNGHIGMQLDILCRGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFL 297
YRN + + M + + EFDQE G P+KM IEE NI GF
Sbjct: 235 YRNYLQAIHKQLDASMYVCVF----------------EFDQEGGLPIKMNIEELNIAGFH 278
Query: 298 SIQGENWGHFRFIAPCTINRSELPLETLAHFDQEK--QQQQPQGMLVFLCIPVAPGRSRV 355
S ENWG+F+FIAP T+ S + + D ++QP+ VF CIPV+PGR RV
Sbjct: 279 SNPEENWGYFKFIAPVTLIGSPFRAKPVVDQDNNNTNNKKQPEVTTVFFCIPVSPGRCRV 338
Query: 356 IWVFPQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTL 415
IW ++ W DK IPRW H+ TN VLDSD +LHIEERN+AA G+D W KACYVPT
Sbjct: 339 IWANGYNLDGWFDKMIPRWWLHIKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPTS 398
Query: 416 SDNMIITFRNWFRKYCKHQVGWATPMVNQLPTTPTKDQLMERYWSHVMQCTSCSAALKWM 475
SDN+II FRNWF+KYC +QVGW TPMVNQLP T+ ++ ERYWSHVMQCTSCSAALKWM
Sbjct: 399 SDNLIIAFRNWFKKYCNNQVGWLTPMVNQLPPASTRVEVYERYWSHVMQCTSCSAALKWM 458
Query: 476 RAMEVALQVASVAVVGFLAAGKGTTXXXXXXXXXXXXXXXXXXXXXSRWLANFIEKSFYF 535
RA+EVALQVASVAVVGFLAAGKGT SRWLA FIEK+FYF
Sbjct: 459 RALEVALQVASVAVVGFLAAGKGTV-VTSGVQRAAVVAAAVLCFAASRWLAGFIEKTFYF 517
Query: 536 QDYVHAYK 543
+DYV A K
Sbjct: 518 EDYVLADK 525
>Os03g0806350
Length = 248
Score = 272 bits (695), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/219 (58%), Positives = 165/219 (75%), Gaps = 4/219 (1%)
Query: 284 VKMKIEEANIDGFLSIQGENWGHFRFIAPCTINRSELPLETLAHFDQEKQQQQPQGMLVF 343
+KM+IEEA+IDGF S +WG+F+F+APCT+ + + A ++K++++P+ +V
Sbjct: 1 MKMRIEEASIDGFHSNLDGDWGYFKFVAPCTLYGTPFRTDLEADEVKKKKKKKPEVRVVL 60
Query: 344 LCIPVAPGRSRVIWVFPQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGV 403
+PVAPGRSR IW V W DK +PRW +HM +NT+LDSD Y LH+E+RN VG+
Sbjct: 61 FTVPVAPGRSRFIWASRYKVGGWLDKILPRWFYHMTSNTILDSDTY-LHVEDRNITTVGL 119
Query: 404 DKWQKACYVPTLSDNMIITFRNWFRKYCKHQVGWATP---MVNQLPTTPTKDQLMERYWS 460
D W KACYVPT SDN++I +RNWFRKYC HQ+GWA P + QLP TPT+DQL+ERYWS
Sbjct: 120 DNWHKACYVPTSSDNLVIAYRNWFRKYCNHQIGWANPNPTVKQQLPQTPTRDQLLERYWS 179
Query: 461 HVMQCTSCSAALKWMRAMEVALQVASVAVVGFLAAGKGT 499
HVMQCTSC AALK MRA+E+ LQVA+VAVVGFLAAGK T
Sbjct: 180 HVMQCTSCRAALKGMRALEITLQVAAVAVVGFLAAGKET 218
>Os03g0806300
Length = 134
Score = 246 bits (629), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/134 (87%), Positives = 123/134 (91%), Gaps = 2/134 (1%)
Query: 106 MVLGLRVVAWFDGGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFI 165
MV+GL VVAW DGGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFI
Sbjct: 1 MVMGLSVVAWLDGGGEWRVVDDACPHRLAPLSEGRVDGKGRLQCAYHGWCFDGHGSCQFI 60
Query: 166 PQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRTEPEYRDVLQRKRPPYFPDL--DDP 223
PQAPALGPPVHKNSKACVASYPSVVQNNILWFYPR+EPEY DVL+RKRPPY P++ DDP
Sbjct: 61 PQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSEPEYCDVLKRKRPPYVPEIDDDDP 120
Query: 224 SFNTVFGVRDFPYG 237
S V+GVRD YG
Sbjct: 121 SHFMVYGVRDLLYG 134
>Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment)
Length = 529
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 236/495 (47%), Gaps = 79/495 (15%)
Query: 82 FDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFD-GGGEWRVVDDACPHRLAPLSEGR 140
F W D WYPV+ V DLDP P +L +V W D GEW +DD CPHRLAPLSEGR
Sbjct: 76 FVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLAPLSEGR 135
Query: 141 VDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVH--KNSKACVASYPSVVQNNILWFY 198
+D G LQC+YHGW FDG G+C IPQA GP ++ KAC +P++V +L+ +
Sbjct: 136 IDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAIKFPTLVSQGLLFVW 195
Query: 199 PRTEPEYRDVLQRKRPPYFP-DLDDPSFNTVFGVRDFPYGYRNAQAILLRNGHIGMQLDI 257
P + + +PP P + +DP+F+TV RD YGY D
Sbjct: 196 P--DENGWEKATATKPPMLPKEFEDPAFSTVTIQRDLYYGY-----------------DT 236
Query: 258 LCRGSIAMQNIHLLSTVEFD-------QERGGPVKMKIEEANIDGFLSIQGENWGHFR-- 308
L M+N+ S +EF ++R P+ K+E + G+ G N G+ R
Sbjct: 237 L------MENVSDPSHIEFAHHKVTGRRDRARPLPFKMESSGAWGY---SGSNSGNPRIS 287
Query: 309 --FIAPC-TINRSELPLETLAHFDQEKQQQQPQGMLVFLC---IPVAPGRSRVI------ 356
F+APC +N+ E+ + DQ+ ++++C IP+APG++R I
Sbjct: 288 ATFVAPCYALNKIEIDTKLPIFGDQK--------WVIWICSFNIPMAPGKTRSIVCSARN 339
Query: 357 -WVFPQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVD-------KWQK 408
+ F AW + +PRW H +N V D D+ +L +E+ F + + ++ K
Sbjct: 340 FFQFSMPGKAW-WQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTK 398
Query: 409 ACYVPTLSDNMIITFRNWFRKYCKHQVGW-ATPMVNQLPTTP-TKDQLMERYWSHVMQCT 466
+ PT +D ++ FR W RK+ Q W P LP+T +K ++++RY H ++C+
Sbjct: 399 ITFTPTQADRFVLAFRAWLRKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCS 458
Query: 467 SCSAALKWMRAMEVALQVASVAVVGFLAAGKGTTXXXXXXXXXXXXXXXXXXXXXSRWLA 526
SC A + ++ A+VA A G + +
Sbjct: 459 SCKGAYNAFQTLQKVFMGATVA----FCATAGIPADVQFRLLLAAAALVSAAVAYAFYT- 513
Query: 527 NFIEKSFYFQDYVHA 541
++K+F F DYVHA
Sbjct: 514 --LQKNFVFVDYVHA 526
>Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 precursor
Length = 539
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 169/427 (39%), Gaps = 69/427 (16%)
Query: 82 FDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDGGGEWRVVDDACPHRLAPLSEGR- 140
+DW ++WYP+ ++ V ++V + D G R +D CPHRLA LSEG+
Sbjct: 83 YDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQL 142
Query: 141 VDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFY-P 199
VDGK L+C YHGW FDG G C IPQ P G + +N AC SY ++W +
Sbjct: 143 VDGK--LECLYHGWQFDGEGKCVKIPQLPD-GAKIPRN--ACARSYEVRDSQGVVWAWMS 197
Query: 200 RTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYGYRNAQAILLRNGHIGMQLDILC 259
T P ++ P+F P F + V + PY + L+ H+ +
Sbjct: 198 GTNPP-----DERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHVPIS----- 247
Query: 260 RGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFLSIQGEN-----WGHFRFIAPCT 314
H + +E P+ ++ E GF G+ RF APC
Sbjct: 248 ---------HDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRFEAPCV 298
Query: 315 INRSELPLETLAHFDQEKQQQQPQGMLVFLCIPVAPGRSRVIWVFPQSVSAWPDKFIPRW 374
+ TL D++ ++Q FLC P G+S ++ F + ++ K +PRW
Sbjct: 299 LT------NTLEFVDKDGKEQCFSAH--FLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRW 350
Query: 375 LHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTL-SDNMIITFRNWFRK---- 429
H V + D+ L + V K Y+ SD + +R W +
Sbjct: 351 YFHQNACKVFEQDMGFLSSQNEVLLREKVPT--KELYLNLRSSDTWVAEYRRWMDRAGHG 408
Query: 430 ---YCKHQVGWATP---MVNQLP---------TTPTKDQL--------MERYWSHVMQCT 466
Y H P +V Q P + P K + RY+ HV+ C
Sbjct: 409 MPYYFGHSTLSPPPVPAVVEQAPAGAVAGMSASFPAKGGVGATHAPNPTNRYFRHVVHCK 468
Query: 467 SCSAALK 473
C ++K
Sbjct: 469 GCRDSVK 475
>Os03g0805800 Pheophorbide a oxygenase domain containing protein
Length = 98
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 6/91 (6%)
Query: 308 RFIAPCTINRSELPLETLA-HFDQ---EKQQQQPQGMLVFLCIPVAPGRSRVIWVFPQSV 363
+F APCT+ P T DQ +K+++QP+ M VFLC+PVAPGRSR+IW FP++V
Sbjct: 2 KFDAPCTLYGK--PFRTKEPQIDQGKEKKKKKQPEAMTVFLCVPVAPGRSRLIWAFPRNV 59
Query: 364 SAWPDKFIPRWLHHMVTNTVLDSDLYLLHIE 394
AW D IPRWL+H+VTN VLDSD YLLHIE
Sbjct: 60 DAWLDNIIPRWLYHIVTNIVLDSDSYLLHIE 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,807,028
Number of extensions: 873062
Number of successful extensions: 2554
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2537
Number of HSP's successfully gapped: 7
Length of query: 543
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 437
Effective length of database: 11,501,117
Effective search space: 5025988129
Effective search space used: 5025988129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)