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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0805800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pheophorbide a oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0157) R2 : 0.00746
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0611 (0.033) R2dN8 : 0.00963 R2N8 : 0.00746
σ : 0.296
deviance : 40.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.03 0.29 3.03 0.176 0.118 -0.141 0.00928 -0.725 0.0325 6.46 69.9 5886 -- --
38.72 0.29 3.03 0.088 0.114 -0.179 -0.000337 -- 0.000999 6.8 73.82 7022 -- --
38.03 0.287 3.03 0.177 0.118 -0.142 -- -0.726 0.0319 6.43 70.25 5890 -- --
38.72 0.29 3.03 0.083 0.115 -0.179 -- -- -0.00128 6.73 74 7023 -- --
38.73 0.29 3.04 0.188 -- -0.159 -- -0.712 0.0237 -- 73.25 5702 -- --
39.3 0.294 3.01 0.0544 0.116 -- -0.00841 -- 0.065 6.42 -- -- -- --
39.3 0.294 3.01 0.0543 0.116 -- -- -- 0.065 6.44 -- -- -- --
39.41 0.292 3.03 0.0873 -- -0.184 -- -- -0.000287 -- 74 7076 -- --
38.9 0.29 3.03 -- 0.119 -0.166 -- -- -0.00403 6.71 73 7023 -- --
40 0.296 3.02 0.0572 -- -- -- -- 0.0675 -- -- -- -- --
39.37 0.294 3.02 -- 0.117 -- -- -- 0.059 6.41 -- -- -- --
39.59 0.293 3.03 -- -- -0.16 -- -- -0.000516 -- 73 7076 -- --
40.09 0.296 3.02 -- -- -- -- -- 0.0611 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.62 temperature 25.0 30 > th dose independent rect. 4 1
4 33.86 temperature 25.0 90 > th dose dependent rect. 4 1
6 34.50 wind 1.0 30 > th dose dependent rect. 4 1
7 34.71 humidity 90.0 10 < th dose independent rect. 4 1
11 36.08 wind 1.0 30 > th dose independent rect. 4 1
12 36.49 temperature 25.0 270 > th dose independent rect. 1 1
13 37.03 temperature 25.0 10 > th dose independent rect. 2 3
15 37.08 temperature 25.0 90 > th dose independent rect. 1 4
19 37.33 atmosphere 1005.0 30 > th dose dependent rect. 2 3
26 37.55 atmosphere 1005.0 30 > th dose dependent rect. 4 1
34 37.68 wind 1.0 10 < th dose independent rect. 2 1
36 37.70 humidity 90.0 270 < th dose independent rect. 1 1
38 37.74 wind 1.0 30 < th dose dependent rect. 2 1
39 37.74 humidity 90.0 30 < th dose dependent rect. 20 1
40 37.76 humidity 90.0 10 < th dose independent rect. 20 1
41 37.76 atmosphere 1005.0 10 > th dose independent rect. 20 1
44 37.76 wind 5.0 30 < th dose dependent rect. 20 1
45 37.76 temperature 30.0 30 < th dose dependent rect. 20 1
46 37.77 temperature 20.0 10 > th dose independent rect. 20 1
50 37.77 atmosphere 1000.0 10 > th dose independent rect. 21 23
53 37.77 atmosphere 995.0 10 > th dose dependent rect. 20 1
56 37.78 wind 1.0 30 > th dose independent rect. 20 1
57 37.78 wind 5.0 30 < th dose independent rect. 20 1
60 37.78 temperature 10.0 30 > th dose independent rect. 20 1
62 37.78 temperature 30.0 30 < th dose independent rect. 20 1
63 37.78 humidity 50.0 30 > th dose independent rect. 20 1
67 37.78 atmosphere 1010.0 30 < th dose independent rect. 20 1
69 37.78 radiation 1.0 30 < th dose independent rect. 20 1
74 37.78 precipitation 0.1 30 < th dose independent rect. 20 1
75 37.78 temperature 10.0 30 > th dose independent rect. 21 23
77 37.78 radiation 1.0 30 < th dose dependent rect. 20 1
82 37.78 radiation 10.0 1440 < th dose dependent rect. 21 1
83 37.78 precipitation 0.1 30 < th dose dependent rect. 20 1
87 37.79 temperature 10.0 30 > th dose dependent rect. 20 1
88 37.79 humidity 50.0 30 > th dose dependent rect. 20 1
89 37.79 atmosphere 1015.0 30 < th dose dependent rect. 20 1
110 37.80 wind 1.0 30 > th dose dependent rect. 20 1
125 37.81 temperature 10.0 1440 > th dose independent rect. 21 1
128 37.81 temperature 30.0 1440 < th dose independent rect. 21 1
133 37.81 humidity 50.0 1440 > th dose independent rect. 21 1
140 37.81 atmosphere 995.0 1440 > th dose independent rect. 21 1
141 37.81 radiation 1.0 1440 < th dose independent rect. 21 1
163 37.81 wind 9.0 30 < th dose independent rect. 3 23
164 37.81 temperature 10.0 1440 > th dose independent rect. 22 23
182 37.83 temperature 25.0 30 < th dose independent rect. 2 1
183 37.83 atmosphere 1015.0 30 < th dose dependent rect. 2 1
189 37.84 temperature 10.0 30 > th dose independent rect. 2 1
192 37.84 humidity 50.0 30 > th dose independent rect. 2 1
196 37.84 atmosphere 995.0 30 > th dose independent rect. 2 1
197 37.84 atmosphere 1010.0 30 < th dose independent rect. 2 1
199 37.84 radiation 1.0 30 < th dose independent rect. 2 1
204 37.84 precipitation 0.1 30 < th dose independent rect. 2 1
206 37.84 temperature 10.0 30 > th dose independent rect. 3 23
208 37.84 temperature 10.0 30 > th dose dependent rect. 2 1
210 37.84 humidity 50.0 30 > th dose dependent rect. 2 1
213 37.84 radiation 1.0 30 < th dose dependent rect. 2 1
218 37.84 precipitation 0.1 30 < th dose dependent rect. 2 1
225 37.85 atmosphere 995.0 30 > th dose dependent rect. 2 1
232 37.86 humidity 90.0 10 < th dose dependent rect. 4 1
238 37.87 atmosphere 1005.0 30 > th dose independent rect. 2 1
240 37.87 temperature 30.0 30 < th dose dependent rect. 2 1
315 38.00 precipitation 0.1 30 < th dose independent rect. 21 23
318 38.00 precipitation 0.1 30 < th dose dependent rect. 21 23
331 38.06 wind 1.0 30 > th dose independent rect. 2 1
338 38.09 temperature 25.0 720 > th dose dependent rect. 24 9
346 38.12 humidity 80.0 14400 < th dose dependent rect. 21 13
350 38.13 humidity 50.0 30 > th dose independent rect. 21 23
361 38.15 wind 9.0 30 < th dose independent rect. 21 23
363 38.15 temperature 25.0 720 > th dose dependent rect. 3 5
366 38.16 humidity 70.0 14400 > th dose independent rect. 8 2
367 38.16 temperature 25.0 720 > th dose dependent rect. 5 3
373 38.17 temperature 25.0 270 > th dose dependent rect. 1 1
377 38.17 atmosphere 995.0 30 > th dose dependent rect. 5 14
394 38.18 humidity 80.0 14400 < th dose dependent rect. 2 7
396 38.19 humidity 70.0 14400 < th dose independent rect. 8 2
403 38.19 humidity 80.0 4320 > th dose dependent rect. 5 4
405 38.20 atmosphere 1000.0 30 > th dose independent rect. 5 21
461 38.25 atmosphere 995.0 30 > th dose dependent rect. 5 21
471 38.27 humidity 90.0 4320 < th dose independent rect. 5 4
486 38.29 humidity 70.0 4320 > th dose independent rect. 14 4
487 38.29 atmosphere 1000.0 720 > th dose independent rect. 21 12
489 38.29 humidity 80.0 14400 < th dose dependent sin 8 NA
507 38.30 atmosphere 1005.0 30 > th dose independent rect. 2 3
516 38.30 atmosphere 995.0 30 > th dose independent rect. 3 23
519 38.30 humidity 50.0 4320 > th dose dependent rect. 5 3
532 38.30 radiation 1.0 90 < th dose dependent rect. 1 22
533 38.31 humidity 70.0 4320 > th dose independent rect. 16 1
542 38.31 humidity 70.0 4320 < th dose independent rect. 14 3
578 38.31 humidity 70.0 4320 > th dose dependent rect. 5 13
605 38.33 humidity 70.0 4320 > th dose independent rect. 14 1
606 38.33 humidity 70.0 4320 < th dose independent rect. 14 1
648 38.34 humidity 90.0 4320 > th dose independent rect. 5 4
653 38.34 humidity 90.0 4320 > th dose independent rect. 5 9
655 38.34 humidity 80.0 4320 < th dose independent rect. 5 14
687 38.35 temperature 25.0 720 > th dose independent rect. 2 7
696 38.35 humidity 70.0 4320 > th dose dependent sin 2 NA
710 38.35 radiation 1.0 90 < th dose dependent rect. 2 19
712 38.36 wind 3.0 14400 > th dose independent rect. 19 1
716 38.36 wind 1.0 30 > th dose independent rect. 2 3
737 38.36 temperature 30.0 270 < th dose independent rect. 10 11
742 38.36 humidity 70.0 4320 > th dose independent rect. 4 14
764 38.37 wind 3.0 14400 > th dose independent rect. 11 1
765 38.37 wind 3.0 14400 < th dose independent rect. 11 1
766 38.37 humidity 60.0 14400 > th dose independent rect. 11 1
802 38.37 temperature 25.0 90 > th dose dependent rect. 1 4
816 38.38 humidity 70.0 4320 > th dose independent sin 21 NA
822 38.38 humidity 60.0 14400 < th dose independent rect. 11 2
844 38.38 humidity 90.0 720 < th dose independent rect. 24 12
849 38.38 humidity 90.0 270 < th dose independent rect. 24 20
850 38.38 wind 5.0 14400 < th dose dependent rect. 11 1
868 38.39 humidity 70.0 4320 > th dose independent sin 19 NA
908 38.39 atmosphere 1005.0 30 > th dose independent rect. 5 14
962 38.40 precipitation 0.1 1440 < th dose independent rect. 21 1