BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0126600 Os03g0126600|Os03g0126600
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0126600 288 2e-78
Os10g0532600 Protein of unknown function DUF623, plant doma... 119 2e-27
Os02g0679700 Protein of unknown function DUF623, plant doma... 94 7e-20
Os04g0577700 Protein of unknown function DUF623, plant doma... 92 3e-19
Os01g0625900 Protein of unknown function DUF623, plant doma... 70 9e-13
Os05g0219550 68 6e-12
Os05g0440900 Protein of unknown function DUF623, plant doma... 66 2e-11
Os12g0158400 Protein of unknown function DUF623, plant doma... 65 3e-11
Os11g0156401 Protein of unknown function DUF623, plant doma... 65 4e-11
>Os03g0126600
Length = 236
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/236 (72%), Positives = 170/236 (72%)
Query: 1 MADQGLPXXXXXXXXXXXXXXRGFMCGCGGAKSVSVVSRLSAAGNIXXXXXXXXXXXXXX 60
MADQGLP RGFMCGCGGAKSVSVVSRLSAAGNI
Sbjct: 1 MADQGLPSKKKKKKGSSAAAARGFMCGCGGAKSVSVVSRLSAAGNISPATTTPPTMTSSA 60
Query: 61 XXXXXXXXRVTVPTPAPNTVHDADGTPSVGTLLLQLRELERGVRALGVREDXXXXXXXXX 120
RVTVPTPAPNTVHDADGTPSVGTLLLQLRELERGVRALGVRED
Sbjct: 61 TATSAKTTRVTVPTPAPNTVHDADGTPSVGTLLLQLRELERGVRALGVREDRGIRPATPP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXLEEESVPVVTESDDPLGDFRRSMAQMIVENEITATPELR 180
LEEESVPVVTESDDPLGDFRRSMAQMIVENEITATPELR
Sbjct: 121 PPRHRRSASDASSGGRRRRGRLEEESVPVVTESDDPLGDFRRSMAQMIVENEITATPELR 180
Query: 181 ELLHRFLSLNSSRHHHLILRAFADVCEELFAGAGEHNHHRPRRRPTKPLPYSATTN 236
ELLHRFLSLNSSRHHHLILRAFADVCEELFAGAGEHNHHRPRRRPTKPLPYSATTN
Sbjct: 181 ELLHRFLSLNSSRHHHLILRAFADVCEELFAGAGEHNHHRPRRRPTKPLPYSATTN 236
>Os10g0532600 Protein of unknown function DUF623, plant domain containing protein
Length = 263
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 22 RGFMCG-CGGAKSVSVVS---RLSAAGNIXXXXXXXXXXXXXXXXXXXXXXRVTVPTPAP 77
RGFMCG CGG+K+VSV + S + +P
Sbjct: 22 RGFMCGGCGGSKAVSVSDGSDKQSPMATPPPNTSSTTTTTTTGSAGNKTTAAAGSSSFSP 81
Query: 78 NTVHD-----AD----GTPSVGTLLLQLRELERGVRAL--------GVREDXXXXXXXXX 120
+ +D AD TPSV LL QL ELER VR+L G + D
Sbjct: 82 SYDYDYVDTDADTSVGSTPSVAALLRQLGELERSVRSLQGAVAEGRGAKNDGRGGGRRHR 141
Query: 121 XXXXXXXXXXXXXXXXXXXXXLEEESVPVVTESDDPLGDFRRSMAQMIVENEITATPELR 180
EESV VV ES DPL DFRRSM QMIVE EI ELR
Sbjct: 142 RTVSDGGGGGSGRV---------EESVAVVKESADPLFDFRRSMLQMIVEKEIVGGAELR 192
Query: 181 ELLHRFLSLNSSRHHHLILRAFADVCEELFAGAG-------EHNHHRPRRRPTKPLPYSA 233
ELLHRFL LNS HHH+ILRAFA++ EE+FAG H RP + K LP S
Sbjct: 193 ELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYERTPDFLVSSRHRRPTK---KKLPASY 249
Query: 234 T 234
T
Sbjct: 250 T 250
>Os02g0679700 Protein of unknown function DUF623, plant domain containing protein
Length = 281
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 146 SVPVVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADV 205
SV VV +SDDPLGDFR+SM QMIVEN I A +LRE+L RFL+LN+ HH +ILRAFA++
Sbjct: 171 SVAVVKQSDDPLGDFRQSMLQMIVENGIVAGEDLREMLRRFLTLNAPHHHDVILRAFAEI 230
Query: 206 CEELFAGAGE--HNHHRP 221
+ +FA H+HH P
Sbjct: 231 WDGVFAATASLVHHHHPP 248
>Os04g0577700 Protein of unknown function DUF623, plant domain containing protein
Length = 367
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 52/70 (74%)
Query: 146 SVPVVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADV 205
S+ VV +S+DP GDFRRSM MIVEN I ELRELLHRFL LN+ HH ILRAFA++
Sbjct: 271 SLAVVKQSEDPRGDFRRSMLNMIVENRIVTGDELRELLHRFLELNAPHHHDAILRAFAEI 330
Query: 206 CEELFAGAGE 215
+E+FAG E
Sbjct: 331 WDEVFAGPDE 340
>Os01g0625900 Protein of unknown function DUF623, plant domain containing protein
Length = 366
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 149 VVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVCEE 208
VV S +P DFR SM +M+VE I + PE+ ELL +LSLNS +HH IL AF DV E
Sbjct: 302 VVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEA 361
Query: 209 LF 210
+F
Sbjct: 362 VF 363
>Os05g0219550
Length = 295
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 149 VVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVCEE 208
VV S DP GDFR SMA+MIVE ++ A EL LL +LSLN R H +IL+AF+D+
Sbjct: 232 VVKRSSDPYGDFRESMAEMIVERQVFAAAELERLLRSYLSLNPPRLHPVILQAFSDIWVV 291
Query: 209 LFAG 212
L G
Sbjct: 292 LRGG 295
>Os05g0440900 Protein of unknown function DUF623, plant domain containing protein
Length = 231
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 156 PLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADV 205
P DFR SM M+VE E+ A EL LLH+FL+LNS RHH LIL AFAD+
Sbjct: 165 PYEDFRESMVAMVVEKEMYAWEELNALLHQFLTLNSPRHHALILHAFADL 214
>Os12g0158400 Protein of unknown function DUF623, plant domain containing protein
Length = 254
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%)
Query: 147 VPVVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVC 206
V V ES DP DFR SM QM+VE + +LR +L R L+LN+ RHH IL AFA+VC
Sbjct: 167 VAVEKESSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVC 226
>Os11g0156401 Protein of unknown function DUF623, plant domain containing protein
Length = 246
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 149 VVTESDDPLGDFRRSMAQMIVENEITATPELRELLHRFLSLNSSRHHHLILRAFADVCEE 208
V ES DP DFR SM QM+VE + +LR +L R L+LN+ HH IL AFA+VC +
Sbjct: 169 VEKESSDPRADFRESMVQMVVEMGLCHWDDLRSMLRRLLALNAPAHHAAILTAFAEVCAQ 228
Query: 209 LFA 211
L A
Sbjct: 229 LAA 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,470,894
Number of extensions: 211835
Number of successful extensions: 712
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 9
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)