BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0799300 Os02g0799300|AK064917
(546 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0799300 Conserved hypothetical protein 1024 0.0
Os04g0644000 Conserved hypothetical protein 494 e-140
Os06g0645600 Peptidase S1 and S6, chymotrypsin/Hap domain c... 334 8e-92
Os01g0121300 Conserved hypothetical protein 315 8e-86
Os02g0183500 Quinonprotein alcohol dehydrogenase-like domai... 295 7e-80
Os11g0264500 Conserved hypothetical protein 111 1e-24
>Os02g0799300 Conserved hypothetical protein
Length = 546
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/546 (90%), Positives = 495/546 (90%)
Query: 1 MALPVSXXXXXXXXXXXXPFCATHPSPGFHAPREFHKALVPDRYGFVARRSIAEAPVDVN 60
MALPVS PFCATHPSPGFHAPREFHKALVPDRYGFVARRSIAEAPVDVN
Sbjct: 1 MALPVSLLRIAAVLLAILPFCATHPSPGFHAPREFHKALVPDRYGFVARRSIAEAPVDVN 60
Query: 61 VTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIAXXXXXXXX 120
VTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIA
Sbjct: 61 VTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIALVWFVLFF 120
Query: 121 XXMLGICCKHCCCPHRSYTYSRVAYALSLILLILFTCAAIVGCVMLYDGQGKFHKSTTTT 180
MLGICCKHCCCPHRSYTYSRVAYALSLILLILFTCAAIVGCVMLYDGQGKFHKSTTTT
Sbjct: 121 LVMLGICCKHCCCPHRSYTYSRVAYALSLILLILFTCAAIVGCVMLYDGQGKFHKSTTTT 180
Query: 181 LNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQNQINEIQGKLNSSATELATR 240
LNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQNQINEIQGKLNSSATELATR
Sbjct: 181 LNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQNQINEIQGKLNSSATELATR 240
Query: 241 TTDNSEKIQKLLNQVRXXXXXXXXXXXXXXFIGFLLSIFGLEFIVSILVIIGWILVTGTF 300
TTDNSEKIQKLLNQVR FIGFLLSIFGLEFIVSILVIIGWILVTGTF
Sbjct: 241 TTDNSEKIQKLLNQVRIALIIIAAVMLLLAFIGFLLSIFGLEFIVSILVIIGWILVTGTF 300
Query: 301 ILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQVTYQLV 360
ILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQVTYQLV
Sbjct: 301 ILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQVTYQLV 360
Query: 361 NLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLCNPFTADLNNRTCTRGEVTLDNATRV 420
NLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLCNPFTADLNNRTCTRGEVTLDNATRV
Sbjct: 361 NLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLCNPFTADLNNRTCTRGEVTLDNATRV 420
Query: 421 WKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQLEDCTFVRDT 480
WKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQLEDCTFVRDT
Sbjct: 421 WKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQLEDCTFVRDT 480
Query: 481 FTNINQNHCPGLERYSKWVYXXXXXXXXXXXXXXXFWVIYARERRHRAYSKQHNYADKPH 540
FTNINQNHCPGLERYSKWVY FWVIYARERRHRAYSKQHNYADKPH
Sbjct: 481 FTNINQNHCPGLERYSKWVYVGLVMVSSAVMLSLVFWVIYARERRHRAYSKQHNYADKPH 540
Query: 541 PTGPDA 546
PTGPDA
Sbjct: 541 PTGPDA 546
>Os04g0644000 Conserved hypothetical protein
Length = 546
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/488 (49%), Positives = 313/488 (64%), Gaps = 7/488 (1%)
Query: 43 RYGFVA--RRSIAEAP-----VDVNVTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEV 95
R G +A RR I E P D S LA RT+R+DPL Y+GGWNIS+
Sbjct: 49 RSGLLATWRRLIVETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQ 108
Query: 96 HYMASVGYTAFPLFIIAXXXXXXXXXXMLGICCKHCCCPHRSYTYSRVAYALSLILLILF 155
HY ASV YTA PL ++ +L I C C C + TYS Y +SLILLI+F
Sbjct: 109 HYWASVAYTAVPLILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSPATYFISLILLIIF 168
Query: 156 TCAAIVGCVMLYDGQGKFHKSTTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFL 215
T A I GC++L+ GQ FH ST T++++V Q N TV++L N S SL+AAK + + + FL
Sbjct: 169 TLATIAGCIILHCGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFL 228
Query: 216 PNDVQNQINEIQGKLNSSATELATRTTDNSEKIQKLLNQVRXXXXXXXXXXXXXXFIGFL 275
P VQ +I+ I+ KLNSSA E +TR +NS+KI+ ++++++ GFL
Sbjct: 229 PVQVQQKIDVIEDKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFL 288
Query: 276 LSIFGLEFIVSILVIIGWILVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDD 335
SI GL F+VS+LVI GW ++ T ++ FLLLHNVVADTCV+M++WV HP HTALDD
Sbjct: 289 FSILGLRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDD 348
Query: 336 IIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLC 395
I+PCV+ ATANES+YRS +VT QLV LVN VI N+SN +FPP Y NQSGPLMP LC
Sbjct: 349 ILPCVDVATANESMYRSEEVTVQLVALVNNVIVNISNRDFPPSFRPLYINQSGPLMPKLC 408
Query: 396 NPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGV 455
+PF D++ R C GEV D A WK FECQTT G+E+C T GRVTP GQM A
Sbjct: 409 DPFNPDMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAA 468
Query: 456 NVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLERYSKWVYXXXXXXXXXXXXXXX 515
++SQGLYQYGPFL++L+DC+FVR+TFT I+ N+CPGLE YS+ VY
Sbjct: 469 SISQGLYQYGPFLMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLISGAVMMSIV 528
Query: 516 FWVIYARE 523
FW+++ R+
Sbjct: 529 FWMVHTRQ 536
>Os06g0645600 Peptidase S1 and S6, chymotrypsin/Hap domain containing protein
Length = 583
Score = 334 bits (857), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 170/364 (46%), Positives = 238/364 (65%), Gaps = 4/364 (1%)
Query: 141 SRVAYALSLILLILFTCAAIVGCVMLYDGQGKFHKSTTTTLNFVVSQANFTVENLNNLSD 200
SR +A+SL LL++FT AI+GC++LYDGQGKFH STT TL FVV+Q++ V +L S
Sbjct: 155 SRAIFAVSLALLLVFTAVAIIGCIVLYDGQGKFHGSTTATLRFVVNQSDGAVASLRGFSG 214
Query: 201 SLSAAKKVDIGRSFLPNDVQNQINEIQGKLNSSATELATRTTDNSEKIQKLLNQVRXXXX 260
+ AAK + ++ LP D+Q +++++ ++++SA +LA RTT NS KI+ L +R
Sbjct: 215 FIEAAKAAAVEKATLPADLQGKVDDVVRRVDASADDLAARTTTNSRKIRTALETIRTILI 274
Query: 261 XXXXXXXXXXFIGFLLSIFGLEFIVSILVIIGWILVTGTFILCGVFLLLHNVVADTCVSM 320
F+G + S+ GL+ +V LVI GWILVT TFIL G FLLLHN V DTCV+M
Sbjct: 275 VVAAVMLALAFLGLVFSLCGLKSLVYTLVIFGWILVTATFILSGTFLLLHNAVGDTCVAM 334
Query: 321 EEWVAHPTEHTALDDIIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNF---PP 377
+EWV HP HTALDDI+PCV+ A +++L RS++V YQ+V+++N ++ V+N N P
Sbjct: 335 DEWVLHPQGHTALDDILPCVDAAATSDALRRSKEVNYQIVSVLNNLLATVANANVPASSP 394
Query: 378 QTPFFYFNQSGPLMPTLCNPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVS-GTEI 436
+P + QSG +P LCNP+ DL++R C GEV +A R W+ + C+ T + +E+
Sbjct: 395 PSPPASYRQSGTPVPLLCNPYNGDLSDRACAAGEVAAADAPRAWRGYVCRATGAAPSSEV 454
Query: 437 CTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLERYS 496
C T GR+TPT+ QM A N S GL QYGP L L DC++VR F + HCPGL R+S
Sbjct: 455 CATTGRLTPTMYDQMVAAANASAGLTQYGPVLADLADCSYVRRAFQAVTAAHCPGLRRHS 514
Query: 497 KWVY 500
VY
Sbjct: 515 GRVY 518
>Os01g0121300 Conserved hypothetical protein
Length = 540
Score = 315 bits (806), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 168/462 (36%), Positives = 260/462 (56%), Gaps = 37/462 (8%)
Query: 40 VPDRYGFVARRSIAEAPVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMA 99
+PD A IA+ P+ VLA+ERT R D L+ R Y GGWNI+ HY A
Sbjct: 59 MPDSAAGPAEGPIAKYPL----------VLAEERTRRPDVLDHLRMYGGGWNITNKHYWA 108
Query: 100 SVGYTAFPLFIIAXXXXXXXXXXMLGICCKHCCCPHRSYTYSRV-------AYALSLILL 152
SV +T F++A GI C + SR+ A L L+LL
Sbjct: 109 SVSFTGIAGFVLAAGWFIS-----FGIAVAASC-----FWKSRIDKENDFHADILRLVLL 158
Query: 153 ILFTCAAIVGCVMLYDGQGKFHKSTTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGR 212
++F G V+L+ GQ KF + T+T++FVV+Q++FT++ L N++D LS AK + +
Sbjct: 159 VVFIFTLTAGSVILFCGQSKFGQEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAA 218
Query: 213 SFLPNDVQNQINEIQGKLNSSATELATRTTDNSEKIQKLLNQVRXXXXXXXXXXXXXXFI 272
+LP+DVQ QI+ ++ LN +A ++ +T++N +I+K+L+ + F+
Sbjct: 219 LYLPSDVQGQIDNLKVDLNKAADTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFL 278
Query: 273 GFLLSIFGLEFIVSILVIIGWILVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTA 332
G++L ++G V + V + W +V FIL G+FL+L++ DTC +M+EW HP TA
Sbjct: 279 GYVLELYGQRSTVYVFVTLCWTVVATLFILLGIFLILNSAAKDTCEAMDEWAQHPQAETA 338
Query: 333 LDDIIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMP 392
L +I+PCV+ +T N++LY+S+ V LV +VN+ I+ +SN + P + G MP
Sbjct: 339 LSNILPCVDESTTNQTLYQSKHVVVILVGIVNRAISALSN-----RRP--HHKHPGQFMP 391
Query: 393 TLCNPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMA 452
LC+P+ A+L +R C EVT DNAT W N+ C TV +++C+ +TP I Q+
Sbjct: 392 YLCSPYDANLTDRQCKSREVTFDNATTAWLNYTC---TVPDSDLCSGPRTITPEIYSQLV 448
Query: 453 AGVNVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLER 494
NVS LY Y P ++ L+DC FVR+TF++I +CP + R
Sbjct: 449 LAANVSYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWR 490
>Os02g0183500 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 565
Score = 295 bits (754), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 181/468 (38%), Positives = 242/468 (51%), Gaps = 36/468 (7%)
Query: 63 TNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIAXXXXXXXXXX 122
+ ++FVLA ERT RKDPL+G R Y+GGWNIS+ HY ASVG+T P+F A
Sbjct: 43 STTTFVLAGERTRRKDPLDGLRLYSGGWNISDEHYWASVGFTVAPVFAAAAIWFVVFGVS 102
Query: 123 MLGICCKHCCCPHRSYTYSR----VAYALSLILLILFTCAAIVGCVMLYDGQGKFHKSTT 178
+ C CCCP S A +SL+LL+ FT AA VGC +LYDGQG+F ST
Sbjct: 103 LFLAGCCFCCCPGSSRGGGGSYSCTALVVSLVLLLAFTAAAAVGCGVLYDGQGRFDGSTA 162
Query: 179 TTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQNQINEIQGKLNSSATELA 238
T+ +V ++ V +L + S+ AAK +G LP V+ I+ + K++S+A ELA
Sbjct: 163 ATVEYVAGKSGDAVASLRGFASSMEAAKAAGVGPVSLPASVKGSIDGVVRKMSSAADELA 222
Query: 239 TRTTDNSEKIQKLLNQVRXXXXXXXXXXXXXXFIGFLLSIFGLEFI-------------V 285
R N+ KI+ L +R +G G ++
Sbjct: 223 ARMASNAAKIRDALETIRKILIVVAATMLILAVLGLGWCFLGGFWLQQRFCSVAPSFCYT 282
Query: 286 SILVIIGW-----------ILVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALD 334
S+ V+I W G IL + H+VV DTC +M EWV P TALD
Sbjct: 283 SVEVVILWDKFFEGCYKTGSCCNGIDILTILLHEYHSVVGDTCAAMGEWVQRPQARTALD 342
Query: 335 DIIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTL 394
DI+PCV+ A A ++L RS+ VT+ LV ++N VI NVSN P Y+NQSGP +P L
Sbjct: 343 DILPCVDTAAAADALARSKDVTHHLVTVLNGVIANVSNAAAAGLPPPLYYNQSGPPVPLL 402
Query: 395 CNPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVSGT--EICTTVGRVTPTILGQMA 452
C+P C GEV L A R W+ C+TT + E+C TVGR+TP + QM
Sbjct: 403 CSP------GERCDPGEVDLAAAPRAWRERVCRTTRAAAAAPEVCATVGRLTPAMYAQMV 456
Query: 453 AGVNVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLERYSKWVY 500
A + L +YGP L + DC FVR F + HCPGL R+S VY
Sbjct: 457 AAASACDALSRYGPVLADMADCAFVRRAFRVVGDEHCPGLGRHSAEVY 504
>Os11g0264500 Conserved hypothetical protein
Length = 545
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 169/444 (38%), Gaps = 30/444 (6%)
Query: 63 TNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIAXXXXXXXXXX 122
TN S R R DPL+G RKY GG+NI+ HY +S +T P ++IA
Sbjct: 42 TNRSDSTLSRRIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIF 101
Query: 123 MLGICCKHCCCPHRSYTYSRVAYAL------SLILLILFTCAAIVGCVMLYDGQGKFHKS 176
+ + R+ Y + Y L S+I+ IL IV + G +FH
Sbjct: 102 VGALLISKIFFAKRNTGYGDMNYFLARFHICSMIIFILLAAFVIVASAIAIRGAVRFHSR 161
Query: 177 TTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQ--NQINEIQGKLNSSA 234
+ A + N+++++ +K+ N+ Q + +N LNS A
Sbjct: 162 AEAVKEIIGRTALEATATIYNITEAI---EKMQNTSRLYNNNSQAFDHLNSTVKALNSEA 218
Query: 235 TELATRTTDNSEKIQKLLNQVRXXXXXXXXXXXXXXFIGFLLSIFGLEFIVSILVIIGWI 294
E+ ++ N + K +N + ++ L+ + ++ + I WI
Sbjct: 219 VEIQSKAEKNMRLVSKGINILEAVTILTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWI 278
Query: 295 LVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQ 354
L ++ G++ L DTC ++EE+ P T L IIPC E + + L+
Sbjct: 279 LTALIWMYFGLYYFLDEFAGDTCAALEEYQLDPKNST-LGTIIPCSEKFSGSVILHDVGA 337
Query: 355 VTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLCNPFTADLNNR----TCTRG 410
+ +++ VN I + + Q + +CNPF R C G
Sbjct: 338 GIHDIIDQVNSNIYTIKSEYGVKQLDY------------ICNPFAGPPEFRYRPENCPSG 385
Query: 411 EVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQ 470
T+ + ++ + C T + G C + G++ + Q + P +
Sbjct: 386 AATIGDIPQILRRLTC--TDLGGGAHCAPAELSSAIDYGKVETYTSSIQNMLDIFPGTER 443
Query: 471 LEDCTFVRDTFTNINQNHCPGLER 494
L C V F +I C L R
Sbjct: 444 LLTCELVESGFADIVGRQCAPLSR 467
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,335,176
Number of extensions: 598703
Number of successful extensions: 1100
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 6
Length of query: 546
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 440
Effective length of database: 11,501,117
Effective search space: 5060491480
Effective search space used: 5060491480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)