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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0264500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.03 (0.0675) R2 : 0.727
β1 : -6.04 (0.253) R2dD : 0.383 R2D : 0.267
β2 : 3.97 (0.251) R2dC : 0.38 R2C : 0.196
β3 : -0.93 (0.209) R2dE : 0.0302 R2E : -0.178
β4 : 3.86 (1.15) R2dD*C : 0.025 R2D*C : -0.0734
β5 : -6.37 (1.02) R2dD*E : 0.086 R2D*E : -0.0035
γ1 : -1.93 (0.142) R2dN8 : 0.148 R2N8 : 0.0393
σ : 1.25
deviance : 710.34
__
_____
C
peak time of C : 23.5
E
wheather : atmosphere
threshold : 999.2
memory length : 714
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 4.24

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
710.34 1.25 7.03 -6.04 3.97 -0.93 3.86 -6.37 -1.93 23.5 999.2 714 13 4.24
766.57 1.29 7.06 -6.32 3.99 -0.958 -2.32 -- -1.98 23.4 1001 799 12.7 2.6
730.21 1.26 7.05 -6.15 4.26 -1.34 -- -4.42 -1.86 23.1 999.5 739 13.1 3.21
781.14 1.3 7.06 -6.26 4.6 -1.5 -- -- -1.85 23.1 999.4 813 12.7 2.82
929.29 1.42 6.84 -5.96 -- 2.54 -- -2.91 -1.92 -- 989 927 13.9 3.13
814.07 1.34 7.08 -6.24 3.26 -- -1.59 -- -2.02 0.0967 -- -- -- --
824.58 1.34 7.07 -6.18 3.27 -- -- -- -2.02 0.201 -- -- -- --
816.78 1.33 7 -6.22 -- 2.85 -- -- -1.99 -- 992.6 784 15.2 4.98
1822.26 1.99 7.01 -- 4.29 -1.22 -- -- -1.32 23.1 994.9 788 12.8 2.75
1498.33 1.81 7 -6.07 -- -- -- -- -1.97 -- -- -- -- --
1831.41 2 6.92 -- 3.19 -- -- -- -1.33 0.0962 -- -- -- --
1833.43 1.99 6.85 -- -- 2.79 -- -- -1.29 -- 989.2 739 15.2 5.27
2471.59 2.32 6.85 -- -- -- -- -- -1.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 715.21 atmosphere 1000.0 720 > th dose independent rect. 13 4
8 722.02 atmosphere 1000.0 270 > th dose independent rect. 13 12
28 730.43 temperature 10.0 10 > th dose dependent sin 23 NA
36 732.31 atmosphere 1000.0 270 > th dose independent sin 15 NA
66 737.45 temperature 10.0 90 > th dose dependent rect. 1 14
70 737.70 temperature 30.0 90 < th dose independent sin 22 NA
74 738.58 temperature 10.0 270 > th dose dependent rect. 5 11
78 738.94 atmosphere 1000.0 720 > th dose independent sin 20 NA
80 739.19 atmosphere 995.0 720 > th dose independent rect. 21 20
83 739.50 atmosphere 1000.0 10 > th dose independent rect. 14 13
85 739.62 atmosphere 995.0 720 > th dose independent rect. 5 20
104 740.98 temperature 10.0 10 > th dose dependent rect. 1 15
106 741.15 atmosphere 995.0 720 > th dose dependent rect. 13 4
130 743.05 humidity 50.0 270 > th dose independent rect. 15 14
136 743.40 atmosphere 995.0 720 > th dose dependent rect. 15 1
138 743.43 temperature 15.0 30 > th dose dependent rect. 7 11
184 745.79 wind 7.0 720 < th dose independent rect. 13 4
225 747.86 temperature 20.0 720 > th dose independent rect. 4 12
237 748.37 temperature 20.0 10 > th dose dependent rect. 7 14
250 748.95 atmosphere 1015.0 720 < th dose dependent rect. 17 4
255 749.09 atmosphere 1015.0 720 < th dose dependent rect. 18 1
265 749.44 temperature 10.0 720 > th dose dependent rect. 4 6
271 749.54 atmosphere 995.0 720 > th dose independent rect. 4 14
274 749.60 radiation 40.0 720 < th dose independent rect. 13 4
301 750.29 radiation 10.0 270 < th dose independent rect. 16 13
302 750.33 precipitation 0.1 720 < th dose independent rect. 18 18
304 750.33 precipitation 0.1 720 < th dose dependent rect. 18 18
306 750.35 precipitation 0.1 720 < th dose independent rect. 17 20
307 750.35 precipitation 0.1 720 < th dose dependent rect. 17 20
310 750.50 temperature 25.0 30 > th dose dependent rect. 19 23
319 750.81 radiation 1.0 270 > th dose independent rect. 17 23
320 750.82 atmosphere 995.0 720 > th dose independent rect. 15 16
338 751.12 temperature 10.0 720 > th dose dependent rect. 5 4
351 751.32 temperature 30.0 90 < th dose independent rect. 3 10
357 751.40 humidity 70.0 10 > th dose independent sin 16 NA
373 751.61 humidity 70.0 30 > th dose independent rect. 18 13
376 751.67 temperature 30.0 10 < th dose independent rect. 3 11
386 751.90 temperature 30.0 270 < th dose independent rect. 24 12
393 752.03 atmosphere 1000.0 10 > th dose independent sin 10 NA
397 752.04 atmosphere 1015.0 720 < th dose independent rect. 1 4
404 752.18 atmosphere 995.0 720 > th dose independent sin 8 NA
413 752.39 wind 9.0 270 < th dose dependent rect. 24 13
414 752.44 temperature 25.0 10 > th dose dependent rect. 4 17
415 752.45 temperature 15.0 720 > th dose independent rect. 1 4
429 752.67 temperature 25.0 10 > th dose dependent rect. 17 23
435 752.75 wind 7.0 270 < th dose independent rect. 1 12
437 752.80 precipitation 0.1 270 < th dose independent rect. 17 12
438 752.80 precipitation 0.1 270 < th dose dependent rect. 17 12
446 752.89 wind 9.0 270 < th dose dependent rect. 23 15
454 753.08 precipitation 0.1 720 < th dose independent rect. 9 20
455 753.08 precipitation 0.1 720 < th dose dependent rect. 9 20
468 753.21 radiation 20.0 270 < th dose dependent rect. 16 13
474 753.25 wind 1.0 720 > th dose independent rect. 17 4
480 753.33 precipitation 0.1 720 < th dose independent rect. 1 4
482 753.33 precipitation 0.1 720 < th dose dependent rect. 1 4
483 753.36 temperature 30.0 90 < th dose independent rect. 15 10
526 753.82 humidity 60.0 720 > th dose independent rect. 5 4
535 753.92 temperature 15.0 720 > th dose independent rect. 17 19
543 754.00 wind 9.0 720 < th dose independent rect. 5 4
544 754.00 temperature 10.0 720 > th dose independent rect. 5 4
546 754.00 atmosphere 995.0 720 > th dose independent rect. 5 4
547 754.00 atmosphere 1015.0 720 < th dose independent rect. 5 4
548 754.00 temperature 10.0 720 > th dose independent rect. 9 20
555 754.03 temperature 15.0 90 > th dose independent rect. 1 14
563 754.12 temperature 10.0 720 > th dose independent rect. 17 4
564 754.12 radiation 30.0 720 < th dose independent rect. 17 4
566 754.12 temperature 10.0 720 > th dose independent rect. 21 20
569 754.14 atmosphere 995.0 270 > th dose dependent rect. 13 10
572 754.21 wind 7.0 90 < th dose independent rect. 3 10
587 754.39 temperature 15.0 270 > th dose independent rect. 1 12
605 754.59 radiation 40.0 720 < th dose independent rect. 5 4
620 754.79 temperature 30.0 270 < th dose independent rect. 5 13
626 754.83 temperature 25.0 30 > th dose dependent rect. 9 12
644 754.99 precipitation 0.1 720 < th dose independent rect. 17 4
646 754.99 precipitation 0.1 720 < th dose dependent rect. 17 4
655 755.08 wind 7.0 90 < th dose independent rect. 3 12
659 755.09 radiation 20.0 10 < th dose dependent sin 17 NA
684 755.25 wind 7.0 720 < th dose independent rect. 17 19
701 755.37 wind 9.0 720 < th dose independent rect. 9 20
707 755.43 precipitation 0.1 720 < th dose independent rect. 5 4
708 755.43 precipitation 0.1 720 < th dose dependent rect. 5 4
711 755.46 wind 9.0 720 < th dose independent rect. 17 4
717 755.54 radiation 10.0 720 < th dose independent rect. 1 6
718 755.54 radiation 1.0 720 < th dose dependent rect. 24 6
723 755.60 radiation 1.0 720 < th dose dependent rect. 1 4
733 755.70 radiation 10.0 720 < th dose independent rect. 1 4
739 755.73 radiation 1.0 270 > th dose independent rect. 5 11
742 755.77 temperature 30.0 720 < th dose independent rect. 5 7
756 755.92 temperature 25.0 10 > th dose dependent rect. 9 23
786 756.04 wind 9.0 720 < th dose independent rect. 5 20
787 756.05 wind 9.0 720 < th dose independent rect. 1 4
789 756.05 temperature 30.0 720 < th dose independent rect. 1 4
790 756.05 humidity 50.0 720 > th dose independent rect. 1 4
793 756.05 atmosphere 995.0 720 > th dose independent rect. 1 4
797 756.05 temperature 10.0 720 > th dose independent rect. 5 20
801 756.09 temperature 10.0 720 > th dose independent rect. 13 4
802 756.09 atmosphere 1015.0 720 < th dose independent rect. 13 4
805 756.10 wind 7.0 270 < th dose independent rect. 12 13
807 756.10 wind 9.0 720 < th dose independent rect. 21 20
820 756.20 radiation 30.0 90 < th dose independent sin 12 NA
843 756.35 radiation 10.0 90 < th dose independent sin 12 NA
846 756.36 atmosphere 1015.0 720 < th dose independent rect. 17 4
847 756.36 precipitation 0.1 90 < th dose independent rect. 1 14
848 756.36 precipitation 0.1 90 < th dose dependent rect. 1 14
849 756.37 temperature 15.0 90 > th dose independent rect. 3 12
853 756.38 humidity 50.0 90 > th dose independent rect. 15 10
860 756.45 precipitation 0.1 270 < th dose independent sin 12 NA
862 756.45 precipitation 0.1 270 < th dose dependent sin 12 NA
867 756.49 radiation 1.0 720 < th dose dependent rect. 21 9
876 756.56 wind 7.0 270 < th dose independent rect. 5 11
886 756.64 atmosphere 1000.0 90 > th dose independent rect. 1 14
889 756.67 temperature 15.0 90 > th dose independent rect. 3 10
890 756.68 precipitation 0.1 270 < th dose independent rect. 5 12
891 756.68 precipitation 0.1 270 < th dose dependent rect. 5 12
898 756.74 temperature 30.0 270 < th dose independent rect. 8 11
911 756.85 radiation 40.0 90 < th dose independent rect. 15 10
921 756.94 precipitation 0.1 270 < th dose independent rect. 1 12
923 756.94 precipitation 0.1 270 < th dose dependent rect. 1 12
929 756.98 temperature 10.0 720 > th dose dependent rect. 17 5
953 757.08 radiation 1.0 720 < th dose dependent rect. 23 15
959 757.11 humidity 50.0 720 > th dose independent rect. 17 4
961 757.12 radiation 20.0 10 < th dose independent sin 13 NA
969 757.13 temperature 25.0 30 > th dose dependent rect. 4 14
991 757.24 precipitation 0.1 90 < th dose independent rect. 15 10
992 757.24 precipitation 0.1 90 < th dose dependent rect. 15 10