BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0264500 Os11g0264500|Os11g0264500
(545 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0264500 Conserved hypothetical protein 957 0.0
Os01g0121300 Conserved hypothetical protein 120 2e-27
Os02g0799300 Conserved hypothetical protein 112 6e-25
Os04g0644000 Conserved hypothetical protein 93 4e-19
Os02g0183500 Quinonprotein alcohol dehydrogenase-like domai... 80 4e-15
>Os11g0264500 Conserved hypothetical protein
Length = 545
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/545 (86%), Positives = 473/545 (86%)
Query: 1 MGEGDSRLXXXXXXXXXXXXXXXLKKSSPHNGAVGRILSEMTNRSDSTLSRRIRRVDPLD 60
MGEGDSRL LKKSSPHNGAVGRILSEMTNRSDSTLSRRIRRVDPLD
Sbjct: 1 MGEGDSRLHATQAQAQGQITQHHLKKSSPHNGAVGRILSEMTNRSDSTLSRRIRRVDPLD 60
Query: 61 GLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKIFFAKRNTGYG 120
GLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKIFFAKRNTGYG
Sbjct: 61 GLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKIFFAKRNTGYG 120
Query: 121 DMNYFLARFHICSMIIFXXXXXXXXXXXXXXXRGAVRFHSRAEAVKEIIGRTALEATATI 180
DMNYFLARFHICSMIIF RGAVRFHSRAEAVKEIIGRTALEATATI
Sbjct: 121 DMNYFLARFHICSMIIFILLAAFVIVASAIAIRGAVRFHSRAEAVKEIIGRTALEATATI 180
Query: 181 YNITEAIEKMQNTSRLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKNMRLVSKGINILE 240
YNITEAIEKMQNTSRLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKNMRLVSKGINILE
Sbjct: 181 YNITEAIEKMQNTSRLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKNMRLVSKGINILE 240
Query: 241 AVTILTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWILTALIWMYFGLYYFLDEFAGDT 300
AVTILTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWILTALIWMYFGLYYFLDEFAGDT
Sbjct: 241 AVTILTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWILTALIWMYFGLYYFLDEFAGDT 300
Query: 301 CAALEEYQLDPKNSTLGTIIPCSEKFSGSVILHDVGAGIHDIIDQVNSNIYTIKSEYGVK 360
CAALEEYQLDPKNSTLGTIIPCSEKFSGSVILHDVGAGIHDIIDQVNSNIYTIKSEYGVK
Sbjct: 301 CAALEEYQLDPKNSTLGTIIPCSEKFSGSVILHDVGAGIHDIIDQVNSNIYTIKSEYGVK 360
Query: 361 QLDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLTCTDLGGGAHCAPAELSSAID 420
QLDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLTCTDLGGGAHCAPAELSSAID
Sbjct: 361 QLDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLTCTDLGGGAHCAPAELSSAID 420
Query: 421 YGKVETYTSSIQNMLDIFPGTERLLTCELVESGFADIVGRQCAPXXXXXXXXXXXXXXXX 480
YGKVETYTSSIQNMLDIFPGTERLLTCELVESGFADIVGRQCAP
Sbjct: 421 YGKVETYTSSIQNMLDIFPGTERLLTCELVESGFADIVGRQCAPLSRGARAAWSALAALS 480
Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXDDRHSVRHLTSSSNSEISEAEFAEMHAKKVRVLA 540
DDRHSVRHLTSSSNSEISEAEFAEMHAKKVRVLA
Sbjct: 481 AATTALLVLAAAAAGVGGGGGARHAGDDRHSVRHLTSSSNSEISEAEFAEMHAKKVRVLA 540
Query: 541 MVDRA 545
MVDRA
Sbjct: 541 MVDRA 545
>Os01g0121300 Conserved hypothetical protein
Length = 540
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/428 (25%), Positives = 180/428 (42%), Gaps = 35/428 (8%)
Query: 51 RRIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKI 110
R RR D LD LR Y GG+NITNKHYW+S FTG G+V+AA W I I V A K
Sbjct: 81 ERTRRPDVLDHLRMYGGGWNITNKHYWASVSFTGIAGFVLAAGWFISFGIAVAASCFWKS 140
Query: 111 FFAKRNTGYGDMNYFLARFHICSMIIFXXXXXXXXXXXXXXXRGAVRFHSRAEAVKEIIG 170
K N + D + R + + IF G +F A + + +
Sbjct: 141 RIDKENDFHAD----ILRLVLLVVFIFTLTAGSVILFC-----GQSKFGQEATSTVDFVV 191
Query: 171 RTALEATATIYNITE--AIEKMQNTSRLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKN 228
+ T+ N+T+ ++ K + + LY S +++ LN A I K +N
Sbjct: 192 NQSDFTIQTLRNVTDYLSLAKTISVAALY-LPSDVQGQIDNLKVDLNKAADTISQKTSEN 250
Query: 229 MRLVSKGINILEAVTILTVTLNLFAVLALL--VMRPLRLQKLCNLCIAICWILTALIWMY 286
R + K ++ L I L VLA L V+ + + + +CW + A +++
Sbjct: 251 YRRIRKVLHNLSVALICIAA--LMPVLAFLGYVLELYGQRSTVYVFVTLCWTVVATLFIL 308
Query: 287 FGLYYFLDEFAGDTCAALEEYQLDPKNST-LGTIIPCSEKFSGSVILHDVGAGIHDIIDQ 345
G++ L+ A DTC A++E+ P+ T L I+PC ++ + + L+ + ++
Sbjct: 309 LGIFLILNSAAKDTCEAMDEWAQHPQAETALSNILPCVDESTTNQTLYQSKHVVVILVGI 368
Query: 346 VNSNIYTIKS-----EYGVKQLDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLT 400
VN I + + ++ + + Y+C+P+ + C S T + T
Sbjct: 369 VNRAISALSNRRPHHKHPGQFMPYLCSPY----DANLTDRQCKSREVTFDNATTAWLNYT 424
Query: 401 CT----DLGGGAHCAPAELSSAIDYGKVETYTSSIQNMLDIFPGTERLLTCELVESGFAD 456
CT DL G E+ S + +Y + P L C+ V + F+
Sbjct: 425 CTVPDSDLCSGPRTITPEIYSQLVLAANVSYA-----LYHYAPLMLNLQDCKFVRNTFSS 479
Query: 457 IVGRQCAP 464
I + C P
Sbjct: 480 IASQYCPP 487
>Os02g0799300 Conserved hypothetical protein
Length = 546
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/439 (21%), Positives = 170/439 (38%), Gaps = 30/439 (6%)
Query: 42 TNRSDSTLSRRIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIF 101
TN S R R DPL+G RKY GG+NI+ HY +S +T P ++IA +W + +
Sbjct: 63 TNSSFVLAQERTYRKDPLNGFRKYTGGWNISEVHYMASVGYTAFPLFIIALVWFVLFFLV 122
Query: 102 VGALLISKIFFAKRNTGYGDMNYFLARFHICSMIIFXXXXXXXXXXXXXXXRGAVRFHSR 161
+ + R+ Y + Y L S+I+ G +FH
Sbjct: 123 MLGICCKHCCCPHRSYTYSRVAYAL------SLILLILFTCAAIVGCVMLYDGQGKFHKS 176
Query: 162 AEAVKEIIGRTALEATATIYNITEAI---EKMQNTSRLYNNNSQAFDHLNSTVKALNSEA 218
+ A + N+++++ +K+ N+ Q + +N LNS A
Sbjct: 177 TTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFLPNDVQ--NQINEIQGKLNSSA 234
Query: 219 VEIQSKAEKNMRLVSKGINILEAVTILTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWI 278
E+ ++ N + K +N + I+ + L ++ L+ + ++ + I WI
Sbjct: 235 TELATRTTDNSEKIQKLLNQVRIALIIIAAVMLLLAFIGFLLSIFGLEFIVSILVIIGWI 294
Query: 279 LTALIWMYFGLYYFLDEFAGDTCAALEEYQLDPKNST-LGTIIPCSEKFSGSVILHDVGA 337
L ++ G++ L DTC ++EE+ P T L IIPC E + + L+
Sbjct: 295 LVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDDIIPCVEPATANESLYRSRQ 354
Query: 338 GIHDIIDQVNSNIYTIKSEYGVKQLDY------------ICNPFAGPPEFRYRPENCPSG 385
+ +++ VN I + + Q + +CNPF R C G
Sbjct: 355 VTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLCNPFTADLNNR----TCTRG 410
Query: 386 AATIGDIPQILRRLTC--TDLGGGAHCAPAELSSAIDYGKVETYTSSIQNMLDIFPGTER 443
T+ + ++ + C T + G C + G++ + Q + P +
Sbjct: 411 EVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGVNVSQGLYQYGPFLIQ 470
Query: 444 LLTCELVESGFADIVGRQC 462
L C V F +I C
Sbjct: 471 LEDCTFVRDTFTNINQNHC 489
>Os04g0644000 Conserved hypothetical protein
Length = 546
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 177/463 (38%), Gaps = 51/463 (11%)
Query: 28 SPHNGAVGRILSEMTNRSDSTLSRRIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPG 87
+P GA G + +S + R R DPL L Y GG+NI+++HYW+S +T P
Sbjct: 63 TPSPGA-GADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYWASVAYTAVPL 121
Query: 88 YVIAALWLIGGIIFVGALLISK---IFFAKRNTGYGDMNYFLARFHICSMIIFXXXXXXX 144
++ LW I+F LLI F K+ Y YF+ S+I+
Sbjct: 122 ILVGMLWF---IVFGIVLLIISCCCCFCRKKYNTYSPATYFI------SLILLIIFTLAT 172
Query: 145 XXXXXXXXRGAVRFHSRA-EAVKEIIGRTALEATATIYNITEAIEKMQNTS--------R 195
G FHS + V I+G+ L ++ N + ++ +N +
Sbjct: 173 IAGCIILHCGQELFHSSTIKTVDYIVGQGNLTVD-SLRNFSGSLAAAKNIGVDQVFLPVQ 231
Query: 196 LYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKNMRLVSKGINILEAVTI-LTVTLNLFAV 254
+ D LNS+ ++ A+E K + M + + ++ AV + L + LF++
Sbjct: 232 VQQKIDVIEDKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFSI 291
Query: 255 LALLVMRPLRLQKLCNLCIAICWILTALIWMYFGLYYFLDEFAGDTCAALEEYQLDPKNS 314
L L+ L +L + W + + M + L DTC A++++ P+
Sbjct: 292 LG--------LRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAH 343
Query: 315 T-LGTIIPCSEKFSGSVILHDVGAGIHDIIDQVNSNIYTIKSE--------YGVKQ---- 361
T L I+PC + + + ++ ++ VN+ I I + + Q
Sbjct: 344 TALDDILPCVDVATANESMYRSEEVTVQLVALVNNVIVNISNRDFPPSFRPLYINQSGPL 403
Query: 362 LDYICNPFAGPPEFRYRPENCPSGAATIGDIPQILRRLTCTDLG--GGAHCAPAELSSAI 419
+ +C+PF P+ P C G ++ C G G CA +
Sbjct: 404 MPKLCDPFN--PDM--SPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPA 459
Query: 420 DYGKVETYTSSIQNMLDIFPGTERLLTCELVESGFADIVGRQC 462
YG++ S Q + P L C V F I C
Sbjct: 460 AYGQMTAAASISQGLYQYGPFLMELQDCSFVRETFTAISDNNC 502
>Os02g0183500 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 565
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 152/378 (40%), Gaps = 30/378 (7%)
Query: 52 RIRRVDPLDGLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISKIF 111
R RR DPLDGLR Y GG+NI+++HYW+S FT P + AA+W + + V L F
Sbjct: 53 RTRRKDPLDGLRLYSGGWNISDEHYWASVGFTVAPVFAAAAIWFV--VFGVSLFLAGCCF 110
Query: 112 FAKRNTGYGDMNYFLARFHICSMIIFXXXXXXXXXXXXXXXRGAVRFHSRAEAVKEIIGR 171
+ G + + S+++ G RF A E +
Sbjct: 111 CCCPGSSRGGGGSYSCTALVVSLVLLLAFTAAAAVGCGVLYDGQGRFDGSTAATVEYVAG 170
Query: 172 TALEATATIYNITEAIEKMQNTS-RLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKNMR 230
+ +A A++ ++E + + + ++ V+ ++S A E+ ++ N
Sbjct: 171 KSGDAVASLRGFASSMEAAKAAGVGPVSLPASVKGSIDGVVRKMSSAADELAARMASNAA 230
Query: 231 LVSKGINILEAVTI-LTVTLNLFAVLAL--LVMRPLRL-QKLCNLCIAICW--ILTALIW 284
+ + + + I + T+ + AVL L + L Q+ C++ + C+ + ++W
Sbjct: 231 KIRDALETIRKILIVVAATMLILAVLGLGWCFLGGFWLQQRFCSVAPSFCYTSVEVVILW 290
Query: 285 MYF--GLY-------------YFLDEF---AGDTCAALEEYQLDPKNST-LGTIIPCSEK 325
F G Y L E+ GDTCAA+ E+ P+ T L I+PC +
Sbjct: 291 DKFFEGCYKTGSCCNGIDILTILLHEYHSVVGDTCAAMGEWVQRPQARTALDDILPCVDT 350
Query: 326 FSGSVILHDVGAGIHDIIDQVNSNIYTIKSEYGVKQLDYICNPFAGPP-EFRYRP-ENCP 383
+ + L H ++ +N I + + + +GPP P E C
Sbjct: 351 AAAADALARSKDVTHHLVTVLNGVIANVSNAAAAGLPPPLYYNQSGPPVPLLCSPGERCD 410
Query: 384 SGAATIGDIPQILRRLTC 401
G + P+ R C
Sbjct: 411 PGEVDLAAAPRAWRERVC 428
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,822,353
Number of extensions: 568734
Number of successful extensions: 1215
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 7
Length of query: 545
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 439
Effective length of database: 11,501,117
Effective search space: 5048990363
Effective search space used: 5048990363
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)