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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0644000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0393) R2 : 0.355
β1 : 0.891 (0.143) R2dD : 0.0592 R2D : 0.0145
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.38 (0.184) R2dE : 0.363 R2E : -0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.1 (0.814) R2dD*E : 0.388 R2D*E : -0.0126
γ1 : 0.0859 (0.085) R2dN8 : 0.00211 R2N8 : -0.0145
σ : 0.717
deviance : 236.8
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.789
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 4.17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.39 0.721 3.12 0.857 0.123 -2.27 -0.474 -10.7 0.0793 2.52 6.719 4320 18.3 4.01
320.1 0.833 3.13 0.844 0.122 -1.03 0.18 -- 0.0165 2.22 6.657 4319 18.4 2.75
235.62 0.715 3.12 0.886 0.143 -2.35 -- -10.8 0.0904 0.733 6.8 4321 18.3 4.13
318.29 0.831 3.13 0.708 0.155 -1.07 -- -- 0.0188 22.9 6.651 4322 18.4 2.78
236.8 0.717 3.13 0.891 -- -2.38 -- -11.1 0.0859 -- 6.789 4321 18.3 4.17
356.03 0.885 3.06 0.586 0.0565 -- -0.572 -- -0.0155 3.75 -- -- -- --
356.77 0.885 3.06 0.594 0.0788 -- -- -- -0.012 0.219 -- -- -- --
288.46 0.791 3.12 0.67 -- -1.08 -- -- 0.0182 -- 8.5 4319 18.4 2.76
290.89 0.794 3.11 -- 0.166 -1.17 -- -- -0.014 21.1 8.4 4319 18.4 2.75
357.16 0.883 3.06 0.597 -- -- -- -- -0.0108 -- -- -- -- --
366.08 0.895 3.08 -- 0.0874 -- -- -- -0.0781 0.586 -- -- -- --
286.46 0.788 3.12 -- -- -1.1 -- -- 0.0287 -- 8.507 4319 18.7 2.22
366.56 0.894 3.07 -- -- -- -- -- -0.077 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.63 wind 7 4320 < th dose independent rect. 18 4
4 243.96 wind 9 4320 > th dose independent rect. 18 3
10 244.66 wind 7 4320 > th dose dependent rect. 18 3
33 245.13 wind 9 4320 < th dose independent rect. 18 9
67 247.26 wind 5 4320 > th dose dependent rect. 20 2
145 257.34 humidity 90 1440 < th dose dependent rect. 3 1
155 259.75 atmosphere 995 14400 < th dose independent rect. 17 1
162 259.75 atmosphere 995 14400 < th dose dependent rect. 17 1
179 260.11 atmosphere 995 14400 > th dose independent rect. 16 3
180 260.18 atmosphere 995 14400 > th dose independent rect. 16 5
198 262.08 humidity 90 1440 < th dose dependent rect. 23 8
235 262.87 atmosphere 995 14400 > th dose independent rect. 10 9
237 262.89 atmosphere 995 14400 > th dose independent rect. 10 11
240 262.90 atmosphere 995 14400 > th dose independent rect. 8 11
244 262.92 atmosphere 995 14400 > th dose independent rect. 8 13
278 263.93 humidity 90 1440 < th dose dependent rect. 2 5
281 264.17 humidity 80 1440 < th dose independent rect. 22 1
422 266.14 humidity 90 1440 < th dose dependent rect. 23 5
439 266.70 atmosphere 995 14400 > th dose independent rect. 19 21
476 267.69 atmosphere 995 14400 > th dose independent sin 4 NA
480 267.75 wind 7 4320 < th dose independent rect. 8 1
498 267.92 atmosphere 995 14400 < th dose dependent sin 0 NA
521 268.17 atmosphere 995 14400 > th dose independent sin 23 NA
527 268.28 atmosphere 995 14400 < th dose independent sin 3 NA
541 268.46 atmosphere 995 14400 < th dose independent sin 22 NA
757 269.74 atmosphere 995 14400 > th dose independent no NA NA
762 269.75 atmosphere 995 14400 > th dose independent rect. 10 23
763 269.75 atmosphere 995 14400 > th dose independent rect. 12 23
764 269.75 atmosphere 995 14400 > th dose independent rect. 14 23
781 269.79 atmosphere 995 14400 > th dose independent rect. 12 21
823 270.02 wind 7 4320 > th dose independent rect. 8 1
884 270.17 atmosphere 995 14400 > th dose independent rect. 14 19
938 270.33 atmosphere 995 14400 < th dose independent no NA NA
1000 270.69 radiation 1 14400 < th dose dependent rect. 23 1