BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0644000 Os04g0644000|AK100283
(546 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0644000 Conserved hypothetical protein 1011 0.0
Os02g0799300 Conserved hypothetical protein 515 e-146
Os02g0183500 Quinonprotein alcohol dehydrogenase-like domai... 322 5e-88
Os01g0121300 Conserved hypothetical protein 309 3e-84
Os11g0264500 Conserved hypothetical protein 83 5e-16
>Os04g0644000 Conserved hypothetical protein
Length = 546
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/534 (92%), Positives = 492/534 (92%)
Query: 1 MAPPATSXXXXXXXXXXXXXXXXXXANACVSDAGFEVSSRVLMSDEQGRSGLLATWRRLI 60
MAPPATS ANACVSDAGFEVSSRVLMSDEQGRSGLLATWRRLI
Sbjct: 1 MAPPATSLIGGGVGGVAYVVLLLFLANACVSDAGFEVSSRVLMSDEQGRSGLLATWRRLI 60
Query: 61 VETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYWASVAYTAVP 120
VETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYWASVAYTAVP
Sbjct: 61 VETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYWASVAYTAVP 120
Query: 121 LILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSPATYXXXXXXXXXXXXXXXXGCIILH 180
LILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSPATY GCIILH
Sbjct: 121 LILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSPATYFISLILLIIFTLATIAGCIILH 180
Query: 181 CGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPVQVQQKIDVIE 240
CGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPVQVQQKIDVIE
Sbjct: 181 CGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPVQVQQKIDVIE 240
Query: 241 DKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFSILGLRFLVSL 300
DKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFSILGLRFLVSL
Sbjct: 241 DKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFSILGLRFLVSL 300
Query: 301 LVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDDILPCVDVATANE 360
LVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDDILPCVDVATANE
Sbjct: 301 LVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDDILPCVDVATANE 360
Query: 361 SMYRSEEVTVQLVALXXXXXXXXSNRDFPPSFRPLYINQSGPLMPKLCDPFNPDMSPRKC 420
SMYRSEEVTVQLVAL SNRDFPPSFRPLYINQSGPLMPKLCDPFNPDMSPRKC
Sbjct: 361 SMYRSEEVTVQLVALVNNVIVNISNRDFPPSFRPLYINQSGPLMPKLCDPFNPDMSPRKC 420
Query: 421 APGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASISQGLYQYGPF 480
APGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASISQGLYQYGPF
Sbjct: 421 APGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASISQGLYQYGPF 480
Query: 481 LMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLISGAVMMSIVFWMVHT 534
LMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLISGAVMMSIVFWMVHT
Sbjct: 481 LMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLISGAVMMSIVFWMVHT 534
>Os02g0799300 Conserved hypothetical protein
Length = 546
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/485 (50%), Positives = 327/485 (67%), Gaps = 7/485 (1%)
Query: 49 RSGLLATWRRLIVETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQ 108
R G +A RR I E P D S LA RT+R+DPL Y+GGWNIS+
Sbjct: 43 RYGFVA--RRSIAEAP-----VDVNVTTNSSFVLAQERTYRKDPLNGFRKYTGGWNISEV 95
Query: 109 HYWASVAYTAVPLILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSPATYXXXXXXXXXX 168
HY ASV YTA PL ++ ++WF++F +V+L I C C C + TYS Y
Sbjct: 96 HYMASVGYTAFPLFIIALVWFVLFFLVMLGICCKHCCCPHRSYTYSRVAYALSLILLILF 155
Query: 169 XXXXXXGCIILHCGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFL 228
GC++L+ GQ FH ST T++++V Q N TV++L N S SL+AAK + + + FL
Sbjct: 156 TCAAIVGCVMLYDGQGKFHKSTTTTLNFVVSQANFTVENLNNLSDSLSAAKKVDIGRSFL 215
Query: 229 PVQVQQKIDVIEDKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFL 288
P VQ +I+ I+ KLNSSA E +TR +NS+KI+ ++++++ L++IAAVML LA GFL
Sbjct: 216 PNDVQNQINEIQGKLNSSATELATRTTDNSEKIQKLLNQVRIALIIIAAVMLLLAFIGFL 275
Query: 289 FSILGLRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDD 348
SI GL F+VS+LVI GW ++ T ++ FLLLHNVVADTCV+M++WV HP HTALDD
Sbjct: 276 LSIFGLEFIVSILVIIGWILVTGTFILCGVFLLLHNVVADTCVSMEEWVAHPTEHTALDD 335
Query: 349 ILPCVDVATANESMYRSEEVTVQLVALXXXXXXXXSNRDFPPSFRPLYINQSGPLMPKLC 408
I+PCV+ ATANES+YRS +VT QLV L SN +FPP Y NQSGPLMP LC
Sbjct: 336 IIPCVEPATANESLYRSRQVTYQLVNLVNQVITNVSNGNFPPQTPFFYFNQSGPLMPTLC 395
Query: 409 DPFNPDMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAA 468
+PF D++ R C GEV D A WK FECQTT G+E+C T GRVTP GQM A
Sbjct: 396 NPFTADLNNRTCTRGEVTLDNATRVWKNFECQTTTVSGTEICTTVGRVTPTILGQMAAGV 455
Query: 469 SISQGLYQYGPFLMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLISGAVMMSIV 528
++SQGLYQYGPFL++L+DC+FVR+TFT I+ N+CPGLE YS+ VY+GL+++S AVM+S+V
Sbjct: 456 NVSQGLYQYGPFLIQLEDCTFVRDTFTNINQNHCPGLERYSKWVYVGLVMVSSAVMLSLV 515
Query: 529 FWMVH 533
FW+++
Sbjct: 516 FWVIY 520
>Os02g0183500 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 565
Score = 322 bits (824), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 195/503 (38%), Positives = 268/503 (53%), Gaps = 50/503 (9%)
Query: 69 GADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYWASVAYTAVPLILVGMLW 128
G + P T + LA RT R+DPL L +YSGGWNISD+HYWASV +T P+ +W
Sbjct: 36 GGGRSSPSTTTFVLAGERTRRKDPLDGLRLYSGGWNISDEHYWASVGFTVAPVFAAAAIW 95
Query: 129 FIVFGIVLLIISCCCCFCRKKYNTYSPATYXXXXXXXXXXXXXXXX----GCIILHCGQE 184
F+VFG+ L + CC C C + GC +L+ GQ
Sbjct: 96 FVVFGVSLFLAGCCFCCCPGSSRGGGGSYSCTALVVSLVLLLAFTAAAAVGCGVLYDGQG 155
Query: 185 LFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPVQVQQKIDVIEDKLN 244
F ST TV+Y+ G+ V SLR F+ S+ AAK GV V LP V+ ID + K++
Sbjct: 156 RFDGSTAATVEYVAGKSGDAVASLRGFASSMEAAKAAGVGPVSLPASVKGSIDGVVRKMS 215
Query: 245 SSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFSILGLRFL------- 297
S+A+E + R N+ KI+ ++ ++ L+V+AA ML LA+ G + LG +L
Sbjct: 216 SAADELAARMASNAAKIRDALETIRKILIVVAATMLILAVLGLGWCFLGGFWLQQRFCSV 275
Query: 298 ------VSLLVIAGW---------------FVLVITIMMSAAFLLLHNVVADTCVAMDDW 336
S+ V+ W + ++TI++ H+VV DTC AM +W
Sbjct: 276 APSFCYTSVEVVILWDKFFEGCYKTGSCCNGIDILTILLHE----YHSVVGDTCAAMGEW 331
Query: 337 VTHPQAHTALDDILPCVDVATANESMYRSEEVTVQLVALXXXXXXXXSNR---DFPPSFR 393
V PQA TALDDILPCVD A A +++ RS++VT LV + SN PP
Sbjct: 332 VQRPQARTALDDILPCVDTAAAADALARSKDVTHHLVTVLNGVIANVSNAAAAGLPP--- 388
Query: 394 PLYINQSGPLMPKLCDPFNPDMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGS--EVCA 451
PLY NQSGP +P LC P +C PGEV+ A W++ C+TT + EVCA
Sbjct: 389 PLYYNQSGPPVPLLCSPGE------RCDPGEVDLAAAPRAWRERVCRTTRAAAAAPEVCA 442
Query: 452 TEGRVTPAAYGQMTAAASISQGLYQYGPFLMELQDCSFVRETFTAISDNNCPGLELYSRH 511
T GR+TPA Y QM AAAS L +YGP L ++ DC+FVR F + D +CPGL +S
Sbjct: 443 TVGRLTPAMYAQMVAAASACDALSRYGPVLADMADCAFVRRAFRVVGDEHCPGLGRHSAE 502
Query: 512 VYLGLLLISGAVMMSIVFWMVHT 534
VY GLL ++ A + S+V W+ H+
Sbjct: 503 VYRGLLAVAVAALASVVLWVAHS 525
>Os01g0121300 Conserved hypothetical protein
Length = 540
Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 248/470 (52%), Gaps = 16/470 (3%)
Query: 53 LATWRR-LIVETPSPGAGADAAHPGTKSLPLAAARTHRRDPLANLTMYSGGWNISDQHYW 111
L W + L+ P AG L LA RT R D L +L MY GGWNI+++HYW
Sbjct: 48 LGPWAKGLLKGMPDSAAGPAEGPIAKYPLVLAEERTRRPDVLDHLRMYGGGWNITNKHYW 107
Query: 112 ASVAYTAVPLILVGMLWFIVFGIVLLIISCCCCFCRKKYNTYSP-ATYXXXXXXXXXXXX 170
ASV++T + ++ WFI FGI + CF + + + +
Sbjct: 108 ASVSFTGIAGFVLAAGWFISFGIAV----AASCFWKSRIDKENDFHADILRLVLLVVFIF 163
Query: 171 XXXXGCIILHCGQELFHSSTIKTVDYIVGQGNLTVDSLRNFSGSLAAAKNIGVDQVFLPV 230
G +IL CGQ F TVD++V Q + T+ +LRN + L+ AK I V ++LP
Sbjct: 164 TLTAGSVILFCGQSKFGQEATSTVDFVVNQSDFTIQTLRNVTDYLSLAKTISVAALYLPS 223
Query: 231 QVQQKIDVIEDKLNSSANEFSTRALENSKKIKHVMDKMQYNLMVIAAVMLGLAIFGFLFS 290
VQ +ID ++ LN +A+ S + EN ++I+ V+ + L+ IAA+M LA G++
Sbjct: 224 DVQGQIDNLKVDLNKAADTISQKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLE 283
Query: 291 ILGLRFLVSLLVIAGWFVLVITIMMSAAFLLLHNVVADTCVAMDDWVTHPQAHTALDDIL 350
+ G R V + V W V+ ++ FL+L++ DTC AMD+W HPQA TAL +IL
Sbjct: 284 LYGQRSTVYVFVTLCWTVVATLFILLGIFLILNSAAKDTCEAMDEWAQHPQAETALSNIL 343
Query: 351 PCVDVATANESMYRSEEVTVQLVALXXXXXXXXSNRDFPPSFRPLYINQSGPLMPKLCDP 410
PCVD +T N+++Y+S+ V V LV + SNR RP + G MP LC P
Sbjct: 344 PCVDESTTNQTLYQSKHVVVILVGIVNRAISALSNR------RPHH-KHPGQFMPYLCSP 396
Query: 411 FNPDMSPRKCAPGEVNFDTAAAEWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASI 470
++ +++ R+C EV FD A W + C P S++C+ +TP Y Q+ AA++
Sbjct: 397 YDANLTDRQCKSREVTFDNATTAWLNYTCTV---PDSDLCSGPRTITPEIYSQLVLAANV 453
Query: 471 SQGLYQYGPFLMELQDCSFVRETFTAISDNNCPGLELYSRHVYLGLLLIS 520
S LY Y P ++ LQDC FVR TF++I+ CP + V GL LI+
Sbjct: 454 SYALYHYAPLMLNLQDCKFVRNTFSSIASQYCPPIWRDLSLVSAGLALIA 503
>Os11g0264500 Conserved hypothetical protein
Length = 545
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 109/493 (22%), Positives = 178/493 (36%), Gaps = 53/493 (10%)
Query: 36 EVSSRVLMSDEQGRSGLLATWRRLIVETPSPGA-GADAAHPGTKSLPLAAARTHRRDPLA 94
E SR+ + Q + + T L +P GA G + +S + R R DPL
Sbjct: 3 EGDSRLHATQAQAQGQI--TQHHLKKSSPHNGAVGRILSEMTNRSDSTLSRRIRRVDPLD 60
Query: 95 NLTMYSGGWNISDQHYWASVAYTAVPLILVGMLWF---IVFGIVLLIISCCCCFCRKKYN 151
L Y GG+NI+++HYW+S +T P ++ LW I+F LLI F K+
Sbjct: 61 GLRKYEGGYNITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALLISK---IFFAKRNT 117
Query: 152 TYSPATYXXXXXXXXXXXXXXXXGCIILHC------GQELFHSSTIKTVDYIVGQGNLTV 205
Y Y ++ G FHS + V I+G+ L
Sbjct: 118 GYGDMNYFLARFHICSMIIFILLAAFVIVASAIAIRGAVRFHSRA-EAVKEIIGRTALEA 176
Query: 206 D-SLRNFSGSLAAAKNIGVDQVFLPVQVQQKIDVIEDKLNSSANEFSTRALENSKKIKHV 264
++ N + ++ +N ++ D LNS+ ++ A+E K +
Sbjct: 177 TATIYNITEAIEKMQNTS--------RLYNNNSQAFDHLNSTVKALNSEAVEIQSKAEKN 228
Query: 265 MDKMQYNLMVIAAVMLGLAIFGFLFSILG--------LRFLVSLLVIAGWFVLVITIMMS 316
M + + ++ AV + L + LF++L L+ L +L + W + + M
Sbjct: 229 MRLVSKGINILEAVTI-LTVTLNLFAVLALLVMRPLRLQKLCNLCIAICWILTALIWMYF 287
Query: 317 AAFLLLHNVVADTCVAMDDWVTHPQAHTALDDILPCVDVATANESMYRSEEVTVQLVALX 376
+ L DTC A++++ P+ T L I+PC S S V + V
Sbjct: 288 GLYYFLDEFAGDTCAALEEYQLDPKNST-LGTIIPC--------SEKFSGSVILHDVGAG 338
Query: 377 XXXXXXXSNRDFPPSFRPLYINQSGPLMPKLCDPFN--PDM--SPRKCAPGEVNFDTAAA 432
N + + Q + +C+PF P+ P C G
Sbjct: 339 IHDIIDQVNSNIYTIKSEYGVKQ----LDYICNPFAGPPEFRYRPENCPSGAATIGDIPQ 394
Query: 433 EWKKFECQTTGPPGSEVCATEGRVTPAAYGQMTAAASISQGLYQYGPFLMELQDCSFVRE 492
++ C G G CA + YG++ S Q + P L C V
Sbjct: 395 ILRRLTCTDLG--GGAHCAPAELSSAIDYGKVETYTSSIQNMLDIFPGTERLLTCELVES 452
Query: 493 TFTAISDNNCPGL 505
F I C L
Sbjct: 453 GFADIVGRQCAPL 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,704,008
Number of extensions: 665004
Number of successful extensions: 2294
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2281
Number of HSP's successfully gapped: 6
Length of query: 546
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 440
Effective length of database: 11,501,117
Effective search space: 5060491480
Effective search space used: 5060491480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)