BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0792800 Os02g0792800|AK105616
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 pr... 848 0.0
Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment) 160 2e-39
Os10g0567100 Similar to Chlorophyll b synthase (Fragment) 124 2e-28
Os10g0567400 Rieske [2Fe-2S] region domain containing protein 114 2e-25
Os03g0805700 Rieske [2Fe-2S] region domain containing protein 111 2e-24
Os03g0805900 Rieske [2Fe-2S] region domain containing protein 100 3e-21
Os03g0806300 71 2e-12
>Os02g0792800 Similar to Rieske iron-sulfur protein Tic55 precursor
Length = 539
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/475 (87%), Positives = 415/475 (87%)
Query: 65 EDGVLLPKEQEDDASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLR 124
EDGVLLPKEQEDDASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLR
Sbjct: 65 EDGVLLPKEQEDDASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLR 124
Query: 125 CHEDRCPHRLAKLSEGQLVDGKLECLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYE 184
CHEDRCPHRLAKLSEGQLVDGKLECLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYE
Sbjct: 125 CHEDRCPHRLAKLSEGQLVDGKLECLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYE 184
Query: 185 VRDSQGVVWAWMSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHV 244
VRDSQGVVWAWMSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHV
Sbjct: 185 VRDSQGVVWAWMSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSILLENLMDPAHV 244
Query: 245 PISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLE 304
PISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLE
Sbjct: 245 PISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLE 304
Query: 305 FVDKDGKEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYFHQNACKVFEQDM 364
FVDKDGKEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYFHQNACKVFEQDM
Sbjct: 305 FVDKDGKEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYFHQNACKVFEQDM 364
Query: 365 GFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMPYYFGHSTLSXXXXX 424
GFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMPYYFGHSTLS
Sbjct: 365 GFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMPYYFGHSTLSPPPVP 424
Query: 425 XXXXXXXXXXXXGMSASFPAKGGVGATHAPNPTNRYFRHVVHCKGCRDSVKRYXXXXXXX 484
GMSASFPAKGGVGATHAPNPTNRYFRHVVHCKGCRDSVKRY
Sbjct: 425 AVVEQAPAGAVAGMSASFPAKGGVGATHAPNPTNRYFRHVVHCKGCRDSVKRYASLKNAF 484
Query: 485 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNWVLSLITTNFIRTHRRL 539
CNWVLSLITTNFIRTHRRL
Sbjct: 485 AALAAAAVAAAILAATRQLKAVLLASAAALAAASYACNWVLSLITTNFIRTHRRL 539
>Os03g0146400 Similar to Lethal leaf-spot 1 (Fragment)
Length = 529
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 52/385 (13%)
Query: 71 PKEQEDDASAA--RYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRD-AAGVLRCHE 127
P E E S+A ++ WR+ WYP+ L +++ P + +R LV+++D +G +
Sbjct: 62 PGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALD 121
Query: 128 DRCPHRLAKLSEGQLVD-GKLECLYHGWQFDGEGKCVKIPQ-LPDG--AKIPRN--ACAR 181
DRCPHRLA LSEG++ + G L+C YHGW FDG G C +IPQ P+G AK R+ ACA
Sbjct: 122 DRCPHRLAPLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQAAPEGPEAKAVRSPKACAI 181
Query: 182 SYEVRDSQGVVWAW--------MSGTNPPDERKLPWFEPYARPGFTDLSTVHELPYDHSI 233
+ SQG+++ W + T PP LP + + P F+ ++ +L Y +
Sbjct: 182 KFPTLVSQGLLFVWPDENGWEKATATKPP---MLP--KEFEDPAFSTVTIQRDLYYGYDT 236
Query: 234 LLENLMDPAHVPISHDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQRTPHLRNLLRF 293
L+EN+ DP+H+ +H + T +R+ A+PL F++ G++G + + R F
Sbjct: 237 LMENVSDPSHIEFAHHKV--TGRRDRARPLPFKMESSGAWGYSG----SNSGNPRISATF 290
Query: 294 EAPCVLTNTLEFVDKDGKEQCFSAH----FLCR---PAGQGKSMLLVRFG------STQT 340
APC N +E D K F ++C P GK+ +V S
Sbjct: 291 VAPCYALNKIEI---DTKLPIFGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSMPG 347
Query: 341 SPLVKVLPRWYFHQNACKVFEQDMGFLSSQNEVLLREKVPTK--------ELYLNLRSSD 392
+++PRWY H + V++ DM L Q ++ L + ++ +D
Sbjct: 348 KAWWQLVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSASKESSADINQQYTKITFTPTQAD 407
Query: 393 TWVAEYRRWMDRAGHGMPYYFGHST 417
+V +R W+ + G+ P +FG+ +
Sbjct: 408 RFVLAFRAWLRKFGNSQPDWFGNPS 432
>Os10g0567100 Similar to Chlorophyll b synthase (Fragment)
Length = 542
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 41/339 (12%)
Query: 89 WYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGKLE 148
WYP+ + ++ DD +P+ F+ Q V++R G C ++ C HR L G + +G+++
Sbjct: 221 WYPVVFSGDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQ 280
Query: 149 CLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYEVRDSQGVVWAWMSGTNPPDERKLP 208
C +HGW++ +GKC K+P A N RS + +G+VW W P E +P
Sbjct: 281 CPFHGWEYSTDGKCEKMP-----ATKLLNVRIRSLPCFEQEGMVWIWPGDGTP--ESTIP 333
Query: 209 WFEPYARPGFT-DLSTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDAQPLFFEV 267
+P + GFT V ELP +H +LL+NL+D AH P +H T AK L +
Sbjct: 334 SLQPPS--GFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAHTST--FAKGWSVPSLVKFL 389
Query: 268 TERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLEFVDKDGK------EQCFSAHF-- 319
T + G GYW P+ + + F PC++ +T + K GK +QC S H
Sbjct: 390 TPAS--GLQGYW----DPYPID-MEFRPPCMVLSTTG-ISKPGKLEGKSIKQC-STHLHQ 440
Query: 320 --LCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYF--HQNACKVFEQDMGFLSSQNEVLL 375
+C P+ + K+ +L + S +P +K +P + KV +D+ + Q E ++
Sbjct: 441 LHICLPSSRNKTRMLYQM-SLNFAPWLKHIPFMHILWSHFGEKVLNEDLRLVLGQQERMI 499
Query: 376 REKVPTKELYLNLRSSDTWVAEYRRWMD---RAGHGMPY 411
++ S D YR W D R + +P+
Sbjct: 500 N----GANVWNWPVSYDKLGIRYRLWRDAIERGANRLPF 534
>Os10g0567400 Rieske [2Fe-2S] region domain containing protein
Length = 541
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 160/334 (47%), Gaps = 38/334 (11%)
Query: 89 WYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGKLE 148
WYP+ + ++ DD +P+ F+ Q V++R G C + C HR L G + +G+++
Sbjct: 220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQ 279
Query: 149 CLYHGWQFDGEGKCVKIPQLPDGAKIPRNACARSYEVRDSQGVVWAWMSGTNPPDERKLP 208
C YHGW++ +GKC K+P + N RS + +G+VW W G +PP + +P
Sbjct: 280 CPYHGWEYSTDGKCEKMP-----STKMLNVRIRSLPCFEQEGMVWIW-PGNDPP-KSTIP 332
Query: 209 WFEPYARPGFT-DLSTVHELPYDHSILLENLMDPAHVPISHDRTDWTAKREDAQPLFFEV 267
P + GFT V ELP +H +LL+NL+D AH P +H T AK L +
Sbjct: 333 SLLPPS--GFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 388
Query: 268 TERTPRGFAGYWGKQRTPHLRNLLRFEAPCVLTNTLEFVDKDGK------EQCFSAHF-- 319
T + G GYW P+ + + F PC++ +T+ + K GK +QC S H
Sbjct: 389 TPSS--GLQGYW----DPYPID-MEFRPPCMVLSTIG-ISKPGKLEGKSTKQC-STHLHQ 439
Query: 320 --LCRPAGQGKSMLLVRFGSTQTSPLVKVLPRWYF--HQNACKVFEQDMGFLSSQNEVLL 375
+C P+ + K+ LL R S +P +K +P + A KV +D+ + Q E ++
Sbjct: 440 LHICLPSSRNKTRLLYRM-SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMI 498
Query: 376 REKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGM 409
++ S D YR W D G+
Sbjct: 499 N----GANVWNWPVSYDKLGIRYRLWRDAIERGV 528
>Os03g0805700 Rieske [2Fe-2S] region domain containing protein
Length = 543
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 154/371 (41%), Gaps = 45/371 (12%)
Query: 71 PKEQEDDASAA---RYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAGVLRCHE 127
P +E A AA R+DW ++WYP+ ++ V ++V + D G R +
Sbjct: 67 PVAEEVRAPAAGEERFDWLDQWYPVAPVCDLDPRKPHGKMVLGLRVVAWFDGGGEWRVVD 126
Query: 128 DRCPHRLAKLSEGQLVDGK--LECLYHGWQFDGEGKCVKIPQLPD-GAKIPRN--ACARS 182
D CPHRLA LSEG+ VDGK L+C YHGW FDG G C IPQ P G + +N AC S
Sbjct: 127 DACPHRLAPLSEGR-VDGKGRLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVAS 185
Query: 183 YEVRDSQGVVWAWMSGTNPP-----DERKLPWFEPYARPGFTDLSTVHELPYDHSILLEN 237
Y ++W + T P ++ P+F P F + V + PY +
Sbjct: 186 YPSVVQNNILW-FYPRTEPEYRDVLQRKRPPYFPDLDDPSFNTVFGVRDFPYGYRNAQAI 244
Query: 238 LMDPAHVPIS--------------HDRTDWTAKREDAQPLFFEVTERTPRGFAGYWGKQR 283
L+ H+ + H + +E P+ ++ E GF G+
Sbjct: 245 LLRNGHIGMQLDILCRGSIAMQNIHLLSTVEFDQERGGPVKMKIEEANIDGFLSIQGEN- 303
Query: 284 TPHLRNLLRFEAPCVLT------NTLEFVDKDGKEQCFSAH--FLCRPAGQGKSMLLVRF 335
RF APC + TL D++ ++Q FLC P G+S ++ F
Sbjct: 304 ----WGHFRFIAPCTINRSELPLETLAHFDQEKQQQQPQGMLVFLCIPVAPGRSRVIWVF 359
Query: 336 GSTQTSPLVKVLPRWYFHQNACKVFEQDMGFLSSQNEVLLREKVPT--KELYLNLRSSDT 393
+ ++ K +PRW H V + D+ L + V K Y+ SD
Sbjct: 360 PQSVSAWPDKFIPRWLHHMVTNTVLDSDLYLLHIEERNFAAVGVDKWQKACYVPTL-SDN 418
Query: 394 WVAEYRRWMDR 404
+ +R W +
Sbjct: 419 MIITFRNWFRK 429
>Os03g0805900 Rieske [2Fe-2S] region domain containing protein
Length = 525
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 144/356 (40%), Gaps = 45/356 (12%)
Query: 78 ASAARYDWREEWYPLYLAKEVPDDAALPLTVFDRQLVLYRDAAG-VLRCHEDRCPHRLAK 136
A R+DW ++WYP+ +++ V +V++ D G R +D CPHRLA
Sbjct: 73 AGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDACPHRLAP 132
Query: 137 LSEGQLVDGK--LECLYHGWQFDGEGKCVKIPQLPD-GAKIPRN--ACARSYEVRDSQGV 191
LSEG+ VDGK L+C YHGW FDG G C IPQ P G + +N AC SY +
Sbjct: 133 LSEGR-VDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNI 191
Query: 192 VWAWMSGTNPPDE---RKLPWFEPYAR----PGFTDLSTVHELPYDHSILLENLMDPAHV 244
+W + E RK P PY R P S V +L Y + L+ + +
Sbjct: 192 LWFYPRSEPEYKEILQRKRP---PYIRELDDPSSVINSGVRDLLYGYRNYLQAIHK--QL 246
Query: 245 PISHDRTDWTAKREDAQPLFFEVTERTPRGFAG----YWGKQRTPHLRNLLRFEAPCVLT 300
S + +E P+ + E GF WG +F AP L
Sbjct: 247 DASMYVCVFEFDQEGGLPIKMNIEELNIAGFHSNPEENWG---------YFKFIAPVTLI 297
Query: 301 NT----LEFVDKDG------KEQCFSAHFLCRPAGQGKSMLLVRFGSTQTSPLVKVLPRW 350
+ VD+D K+ + F C P G+ ++ G K++PRW
Sbjct: 298 GSPFRAKPVVDQDNNNTNNKKQPEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRW 357
Query: 351 YFHQNACKVFEQDMGFL--SSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDR 404
+ H +V + D L +N K Y+ SSD + +R W +
Sbjct: 358 WLHIKTNQVLDSDSSVLHIEERNYAAFGLDNWHKACYVPT-SSDNLIIAFRNWFKK 412
>Os03g0806300
Length = 134
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 107 TVFDRQLVLYRDAAGVLRCHEDRCPHRLAKLSEGQLVDGK--LECLYHGWQFDGEGKCVK 164
V +V + D G R +D CPHRLA LSEG+ VDGK L+C YHGW FDG G C
Sbjct: 1 MVMGLSVVAWLDGGGEWRVVDDACPHRLAPLSEGR-VDGKGRLQCAYHGWCFDGHGSCQF 59
Query: 165 IPQLPD-GAKIPRN--ACARSYEVRDSQGVVWAWMSGTNPPDERKLPWFEPYARPGFTDL 221
IPQ P G + +N AC SY VV + + WF P + P + D+
Sbjct: 60 IPQAPALGPPVHKNSKACVASYP-----SVV-----------QNNILWFYPRSEPEYCDV 103
Query: 222 STVHELPYDHSILLENLMDPAH 243
PY I + DP+H
Sbjct: 104 LKRKRPPYVPEI---DDDDPSH 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,590,432
Number of extensions: 708449
Number of successful extensions: 1239
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 7
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)