BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0782500 Os02g0782500|AK119261
(172 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0782500 Similar to Small heat stress protein class CIII 257 3e-69
Os01g0184200 Similar to 17.5 kDa class II heat shock protein 90 8e-19
Os01g0257200 80 6e-16
Os03g0267200 Low molecular mass heat shock protein Oshsp17.7 71 5e-13
Os03g0266300 Class I low-molecular-weight heat shock protei... 69 2e-12
Os03g0267000 Low molecular mass heat shock protein Oshsp18.0 64 4e-11
Os03g0266900 Low molecular mass heat shock protein Oshsp17.3 64 7e-11
>Os02g0782500 Similar to Small heat stress protein class CIII
Length = 172
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 134/172 (77%)
Query: 1 MTELFDTAVTSLLHLPEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXRISGIGGGAPVDIM 60
MTELFDTAVTSLLHLPEVL RISGIGGGAPVDIM
Sbjct: 1 MTELFDTAVTSLLHLPEVLDRLGAAAGDRRSAGDHAHHAAHGHGQHRISGIGGGAPVDIM 60
Query: 61 ETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXCKYIRLERR 120
ETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGN CKYIRLERR
Sbjct: 61 ETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERR 120
Query: 121 ASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVTIA 172
ASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVTIA
Sbjct: 121 ASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVTIA 172
>Os01g0184200 Similar to 17.5 kDa class II heat shock protein
Length = 166
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Query: 56 PVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXCKYI 115
P D+ + PG YAFV+D+PGL SDI+V +EE+R+LV+ CKY+
Sbjct: 54 PADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGER---RRGGGEEEKEESCKYL 110
Query: 116 RLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKK 156
R+ERR F RKF LP++AD ISA C++GVLTVTV+K
Sbjct: 111 RMERRMGK--FMRKFVLPDNADVDKISAVCQDGVLTVTVEK 149
>Os01g0257200
Length = 129
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 43/58 (74%)
Query: 112 CKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQV 169
CKYIRL+R A PR+FA KF LPED+DTG IS CENG+L V VKK PEKKT S +
Sbjct: 43 CKYIRLKRHALPRSFAHKFCLPEDSDTGDISTHCENGLLMVIVKKWMLPEKKTTSAAL 100
>Os03g0267200 Low molecular mass heat shock protein Oshsp17.7
Length = 159
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 53 GGAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXC 112
GA +D ETP + F DVPGL K +++V +++ +L +
Sbjct: 50 AGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERS-------REQEEKSD 102
Query: 113 KYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVT 170
K+ R+ER + F R+FRLPE+ I A ENGVLTVTV K P + KS+Q++
Sbjct: 103 KWHRVERSSG--KFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQIS 158
>Os03g0266300 Class I low-molecular-weight heat shock protein 17.9
Length = 161
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 53 GGAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXC 112
GA +D ETP + F DVPGL K +++V +++ +L + +G N
Sbjct: 52 AGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQI---SGERNKEQEEKTD---- 104
Query: 113 KYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVT 170
++ R+ER S F R+FRLP++A I A ENGVLTVTV K + KS+Q++
Sbjct: 105 QWHRVER--SSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQIS 160
>Os03g0267000 Low molecular mass heat shock protein Oshsp18.0
Length = 161
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 53 GGAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXC 112
GA +D ETP + F DVPGL K +++V +E+ VL +
Sbjct: 52 AGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTD------- 104
Query: 113 KYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVT 170
K+ R+ER + F R+FRLPE+ I A ENGVLTVTV K P + KS+QVT
Sbjct: 105 KWHRVERSSG--KFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVT 160
>Os03g0266900 Low molecular mass heat shock protein Oshsp17.3
Length = 154
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 54 GAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNXXXXXXXXXXXCK 113
GA +D ETP + F DVPGL K +++V +E+ VL + K
Sbjct: 46 GARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGER-------IKEQEEKTDK 98
Query: 114 YIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQVT 170
+ R+ER + F R+FRLPE+ I A ENGVLTVTV K P + KS+Q+T
Sbjct: 99 WHRVERSSG--KFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQIT 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,986,233
Number of extensions: 166577
Number of successful extensions: 414
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 11
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)