BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0765300 Os02g0765300|M81143
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0765300 Similar to Alpha-amylase precursor (EC 3.2.1.1... 204 8e-54
Os02g0765600 Alpha-amylase precursor (EC 3.2.1.1) (1,4-alph... 195 6e-51
Os08g0473900 Alpha-amylase isozyme 3D precursor (EC 3.2.1.1... 172 5e-44
Os06g0713800 Alpha-amylase isozyme 2A precursor (EC 3.2.1.1... 167 1e-42
Os09g0457500 Alpha-amylase isozyme 3B precursor (EC 3.2.1.1... 165 8e-42
Os09g0457800 Alpha-amylase isozyme 3C precursor (EC 3.2.1.1... 160 1e-40
Os08g0473600 Alpha-amylase isozyme 3E precursor (EC 3.2.1.1... 160 2e-40
Os09g0457400 Alpha-amylase isozyme 3A precursor (EC 3.2.1.1... 158 7e-40
Os01g0715400 Glycoside hydrolase family 13 protein 93 5e-20
Os04g0403300 Similar to Alpha-amylase (EC 3.2.1.1) 91 2e-19
>Os02g0765300 Similar to Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase) (Isozyme 1B)
Length = 117
Score = 204 bits (520), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/117 (86%), Positives = 101/117 (86%)
Query: 1 SKRFXXXXXXXXXXXXXXXXAAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHV 60
SKRF AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHV
Sbjct: 1 SKRFLSLSLLILLLGFSSSLAAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHV 60
Query: 61 WLPPPSQSVAEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
WLPPPSQSVAEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT
Sbjct: 61 WLPPPSQSVAEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
>Os02g0765600 Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase) (Isozyme 1B)
Length = 434
Score = 195 bits (495), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/97 (95%), Positives = 93/97 (95%)
Query: 21 AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLY 80
AGQVLFQGFNWESWKENGGWYN LMGKVDDIAAAGITHVWLPPPS SV EQGYMPGRLY
Sbjct: 29 TAGQVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVGEQGYMPGRLY 88
Query: 81 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT
Sbjct: 89 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 125
>Os08g0473900 Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 476
Score = 172 bits (436), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 84/94 (89%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
QVLFQGFNWESWK+ GGWYNML G+VDDIA AG+THVWLPPPS SVA QGYMPGRLYDLD
Sbjct: 66 QVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLD 125
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
ASKYG A+LKSLI AFHGKGVQ +AD+VINHR
Sbjct: 126 ASKYGTAAELKSLIAAFHGKGVQCVADVVINHRC 159
>Os06g0713800 Alpha-amylase isozyme 2A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 445
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 84/94 (89%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
++LFQGFNWESW+++GGWYN+LMGKVDDI AAG+THVWLPPPS SV+ QGYMPGRLYDLD
Sbjct: 23 KILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLD 82
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
AS+YG +LKSLI A HGKG+Q IAD+VINHR
Sbjct: 83 ASRYGTSMELKSLISALHGKGIQAIADVVINHRC 116
>Os09g0457500 Alpha-amylase isozyme 3B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 438
Score = 165 bits (417), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 75/97 (77%), Positives = 82/97 (84%)
Query: 21 AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLY 80
A QVLFQGFNWESWK+ GGWYN L G VDDIAA G+THVWLPPPS SVA QGYMPGRLY
Sbjct: 24 AQAQVLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLY 83
Query: 81 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
DLDASKYG A+L+SLI AFH KG++ +ADIVINHR
Sbjct: 84 DLDASKYGTGAELRSLIAAFHSKGIKCVADIVINHRC 120
>Os09g0457800 Alpha-amylase isozyme 3C precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 437
Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 80/97 (82%)
Query: 21 AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLY 80
A QVLFQGFNWESWK+ GGWYN L VDDIAA G+THVWLPPPS SVA QGYMPGRLY
Sbjct: 24 AQAQVLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLY 83
Query: 81 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
DLDASKYG A+L+SLI AFH K ++ +ADIVINHR
Sbjct: 84 DLDASKYGTGAELRSLIAAFHSKSIKCVADIVINHRC 120
>Os08g0473600 Alpha-amylase isozyme 3E precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 437
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 82/97 (84%)
Query: 21 AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLY 80
A QVLFQGFNWESW++ GGWYN L KV++IA+ G THVWLPPPS SV+ QGYMPGRLY
Sbjct: 23 AQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLY 82
Query: 81 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
DLDASKYG EA+LKSLIEAFH K V+ +ADIVINHR
Sbjct: 83 DLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRC 119
>Os09g0457400 Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan
glucanohydrolase)
Length = 440
Score = 158 bits (400), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 84/97 (86%)
Query: 21 AAGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLY 80
A Q+LFQGFNW+SWK+ GGWYNML +V DIA+AG+THVWLPPP+ SV+ QGYMPGRLY
Sbjct: 26 AQTQILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLY 85
Query: 81 DLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
DL+ASKYG +A+LKSLI AFH KG++ +ADIV+NHR
Sbjct: 86 DLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRC 122
>Os01g0715400 Glycoside hydrolase family 13 protein
Length = 561
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
++L QGFNWES K +G WY L K ++++ G T VW PPP+ SV+ +GYMP LY+L+
Sbjct: 170 EILCQGFNWESHK-SGKWYVELGSKAKELSSMGFTIVWSPPPTDSVSPEGYMPRDLYNLN 228
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
S+YG +LK ++ FH G++V+ D V+NHR
Sbjct: 229 -SRYGTMEELKEAVKRFHEAGMKVLGDAVLNHRC 261
>Os04g0403300 Similar to Alpha-amylase (EC 3.2.1.1)
Length = 469
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
++LFQ FNWES K N W++ L KV D+A +G T WLPPP+QS++ +GY+P LY LD
Sbjct: 55 EILFQAFNWESHKHN--WWSNLEEKVVDLAQSGFTSAWLPPPTQSLSPEGYLPQNLYCLD 112
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
S YG+ L++L+ V+ +AD+VINHR
Sbjct: 113 -SCYGSLHDLQALLRKMKEHNVRAMADVVINHRV 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,007,207
Number of extensions: 150590
Number of successful extensions: 413
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 10
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)