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Os04g0403300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase (EC 3.2.1.1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0137) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.655 (0.0353) R2dC : 0.431 R2C : 0.431
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0229 (0.0289) R2dN8 : 0.00101 R2N8 : 0.00127
σ : 0.259
deviance : 30.61
__
_____
C
peak time of C : 4.26
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.62 0.238 10.4 0.0334 0.812 -0.582 0.195 -0.372 -0.0734 3.85 27.7 28 -- --
25.84 0.239 10.4 -0.0249 0.807 -0.559 0.0616 -- -0.083 3.81 28.1 27 -- --
25.71 0.236 10.4 0.0143 0.813 -0.585 -- -0.272 -0.0821 3.83 27.67 27 -- --
25.81 0.237 10.4 -0.0257 0.805 -0.566 -- -- -0.0874 3.83 27.8 27 -- --
52.22 0.337 10.4 0.135 -- 0.256 -- 0.354 0.0727 -- 46.18 198 -- --
30.3 0.258 10.4 0.108 0.653 -- 0.0343 -- 0.0351 4.27 -- -- -- --
30.3 0.258 10.4 0.108 0.653 -- -- -- 0.035 4.27 -- -- -- --
52.29 0.337 10.4 0.189 -- 0.256 -- -- 0.0902 -- 33.2 174 -- --
25.83 0.237 10.4 -- 0.805 -0.554 -- -- -0.0858 3.85 27.8 27 -- --
53.34 0.341 10.4 0.134 -- -- -- -- 0.0523 -- -- -- -- --
30.61 0.259 10.4 -- 0.655 -- -- -- 0.0229 4.26 -- -- -- --
53.16 0.34 10.4 -- -- 0.195 -- -- 0.0604 -- 33.3 174 -- --
53.81 0.342 10.4 -- -- -- -- -- 0.0374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.70 temperature 10 30 > th dose dependent rect. 23 23
2 24.72 temperature 25 4320 > th dose independent rect. 23 2
4 24.75 temperature 25 4320 < th dose independent rect. 23 2
11 25.03 atmosphere 1000 1440 < th dose dependent rect. 21 15
15 25.06 atmosphere 1000 1440 < th dose dependent rect. 21 10
22 25.08 atmosphere 1000 1440 < th dose independent rect. 21 15
27 25.09 atmosphere 1000 1440 > th dose independent rect. 21 14
51 25.14 atmosphere 1000 1440 > th dose independent rect. 23 12
56 25.14 temperature 20 1440 > th dose dependent rect. 24 1
68 25.16 atmosphere 995 14400 < th dose independent rect. 16 1
73 25.16 atmosphere 995 14400 < th dose dependent rect. 16 1
89 25.18 atmosphere 1000 1440 > th dose independent rect. 23 6
90 25.18 atmosphere 1000 1440 > th dose independent rect. 23 8
91 25.18 atmosphere 1000 1440 > th dose independent rect. 23 10
121 25.22 atmosphere 1000 1440 > th dose independent rect. 23 4
128 25.24 atmosphere 1000 1440 > th dose independent rect. 23 2
160 25.27 atmosphere 1000 1440 < th dose dependent rect. 1 2
219 25.37 atmosphere 995 14400 > th dose independent rect. 12 8
239 25.39 atmosphere 995 14400 > th dose independent rect. 10 10
248 25.40 atmosphere 995 14400 > th dose independent rect. 18 2
249 25.40 atmosphere 995 14400 > th dose independent rect. 15 5
299 25.43 atmosphere 1000 1440 < th dose independent rect. 1 2
340 25.47 atmosphere 1000 1440 < th dose independent rect. 3 2
426 25.57 temperature 30 10 < th dose dependent rect. 12 22
557 25.68 temperature 30 10 < th dose dependent rect. 16 18
605 25.74 atmosphere 1000 1440 > th dose independent rect. 6 1
616 25.75 temperature 25 4320 < th dose independent sin 12 NA
621 25.75 temperature 30 1440 < th dose dependent rect. 23 1
622 25.75 temperature 10 720 > th dose dependent rect. 13 18
674 25.80 temperature 30 30 < th dose dependent rect. 7 23
676 25.81 atmosphere 1000 1440 > th dose independent rect. 9 2
687 25.82 atmosphere 1000 1440 < th dose independent rect. 9 2
699 25.82 temperature 30 30 < th dose dependent rect. 1 23
712 25.84 temperature 25 4320 > th dose independent sin 12 NA
745 25.86 atmosphere 1000 1440 < th dose dependent rect. 9 3
756 25.87 temperature 15 10 > th dose dependent rect. 13 23
761 25.88 atmosphere 1000 1440 < th dose dependent rect. 11 1
793 25.91 temperature 30 10 < th dose dependent rect. 16 14
794 25.91 temperature 30 10 < th dose dependent rect. 14 16
822 25.94 temperature 30 30 < th dose dependent no NA NA
828 25.94 temperature 30 10 < th dose dependent rect. 17 23
851 25.96 temperature 10 30 > th dose dependent no NA NA
861 25.96 temperature 30 10 < th dose dependent rect. 9 23
863 25.97 atmosphere 1005 14400 < th dose independent rect. 23 1
875 25.97 temperature 30 720 < th dose dependent rect. 16 17
876 25.97 temperature 30 30 < th dose dependent rect. 3 23
878 25.97 temperature 30 30 < th dose dependent rect. 15 23
886 25.98 atmosphere 1000 270 < th dose independent rect. 11 21
926 26.00 temperature 10 720 > th dose dependent rect. 13 22
938 26.01 temperature 25 1440 < th dose dependent rect. 21 1
944 26.01 wind 9 43200 > th dose dependent rect. 18 12
949 26.01 atmosphere 1000 270 < th dose dependent rect. 13 19
979 26.03 temperature 25 90 < th dose dependent rect. 23 23
990 26.04 temperature 10 270 > th dose dependent sin 11 NA
1000 26.04 temperature 30 10 < th dose dependent rect. 5 23