BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0403300 Os04g0403300|Os04g0403300
(469 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414 619 e-178
AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888 420 e-118
AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424 344 6e-95
>AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414
Length = 413
Score = 619 bits (1597), Expect = e-178, Method: Compositional matrix adjust.
Identities = 286/398 (71%), Positives = 342/398 (85%), Gaps = 2/398 (0%)
Query: 47 GGIIKHGREILFQAFNWESHKHNWWSNLEEKVVDLAQSGFTSAWLPPPTQSLSPEGYLPQ 106
G +I+ GRE++ QA+NWESHK++WW NL+ KV D+A+SGFTSAWLPPP+QSL+PEGYLPQ
Sbjct: 18 GRVIRDGREVILQAYNWESHKYDWWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQ 77
Query: 107 NLYCLDSCYGSLHDLQALLRKMKEHNVRAMADVVINHRVGTTQGSNGMYNRYDGIPVSWD 166
+LY L+S YGS H L++LLRKMK++ VRAMAD+VINHRVGTT+G GMYNRYDGI + WD
Sbjct: 78 DLYSLNSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGISLPWD 137
Query: 167 EHAVTSCSGGKGNESTGDNFDGVPNIDHTQPFVRKDIIDWLIWLRESIGFQDFRFDFTKG 226
EHAVTSC+GG GN STGDNF+GVPN+DHTQ FVRKDII WL WLR ++GFQDFRFDF +G
Sbjct: 138 EHAVTSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFDFARG 197
Query: 227 YAAKFVKEYIEQSKPLFAVGEYWDSCEYSPPDYRLNYNQDKHRQRIINWMDSTGGLCAAF 286
Y+A +VKEYI +KPLF+VGE WDSC Y+ + L+YNQD HRQRII+W+D+TG + AAF
Sbjct: 198 YSANYVKEYIGAAKPLFSVGECWDSCNYN--GHGLDYNQDSHRQRIISWIDATGQISAAF 255
Query: 287 DFTTKGILQEAVKGELWRLRDPEGKPPGVMGWWPSRSVTFVENHDTGSTQGHWPFPSDHI 346
DFTTKGILQEAVKG+ WRL D +GKPPGVMGWWPSR+VTF++NHDTGSTQ HWPFPS H+
Sbjct: 256 DFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSHHV 315
Query: 347 MEGYAYILTHPGIPTVFYDHFYGKDDSFHGGIAKLMEIRKCQDIHSRSAVKILEASSDLY 406
MEGYAYILTHPGIP VFYDHFY S H I KL++IR+ QDIHSRS V++L+A S+LY
Sbjct: 316 MEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIHSRSTVRVLKAESNLY 375
Query: 407 SAIVDDKLCMKIGDGSWCPSGPEWKLAASGDRYAVWHK 444
+AIV +K+CMK+GDGSWCPSG +W LA SG RYAVWHK
Sbjct: 376 AAIVGEKICMKLGDGSWCPSGRDWTLATSGHRYAVWHK 413
>AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888
Length = 887
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/398 (50%), Positives = 276/398 (69%), Gaps = 13/398 (3%)
Query: 53 GREILFQAFNWESHKH-NWWSNLEEKVVDLAQSGFTSAWLPPPTQSLSPEGYLPQNLYCL 111
G EIL Q FNWES+K W+ L+EK +LA GFT WLPPPT+S+SPEGY+P++LY L
Sbjct: 494 GFEILCQGFNWESNKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNL 553
Query: 112 DSCYGSLHDLQALLRKMKEHNVRAMADVVINHRVGTTQGSNGMYNRYDGIPVSWDEHAVT 171
+S YG++ +L+ ++K + ++ + D V+NHR + NG++N + G ++WD+ AV
Sbjct: 554 NSRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLFGG-RLNWDDRAVV 612
Query: 172 SCS---GGKGNESTGDNFDGVPNIDHTQPFVRKDIIDWLIWLRESIGFQDFRFDFTKGYA 228
+ G+GN+S+GDNF PNIDH+Q FVRKDI +WL W+ E +G+ +R DF +G+
Sbjct: 613 ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGFW 672
Query: 229 AKFVKEYIEQSKPLFAVGEYWDSCEYSPPDYRLNYNQDKHRQRIINWMDSTGGLCAAFDF 288
+VK+Y++ SKP FAVGEYWDS Y+ + ++YNQD HRQRI++W+++T G AFD
Sbjct: 673 GGYVKDYMDASKPYFAVGEYWDSLSYTYGE--MDYNQDAHRQRIVDWINATSGAAGAFDV 730
Query: 289 TTKGILQEAV-KGELWRLRDPEGKPPGVMGWWPSRSVTFVENHDTGSTQGHWPFPSDHIM 347
TTKGIL A+ K E WRL DP+GKPPGV+GWWPSR+VTF+ENHDTGSTQGHW FP M
Sbjct: 731 TTKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEM 790
Query: 348 EGYAYILTHPGIPTVFYDHFYGKDDSFHGGIAKLMEIRKCQDIHSRSAVKILEASSDLYS 407
+GYAYILTHPG P VF+DH + +H IA L+ +R Q +H RS V I ++ D+Y+
Sbjct: 791 QGYAYILTHPGTPAVFFDHIFS---DYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVYA 847
Query: 408 AIVDDKLCMKIGDGSWCP--SGPEWKLAASGDRYAVWH 443
AI+D+K+ MKIG G + P W +A G Y VW
Sbjct: 848 AIIDEKVAMKIGPGHYEPPNGSQNWSVAVEGRDYKVWE 885
>AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424
Length = 423
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/406 (45%), Positives = 262/406 (64%), Gaps = 27/406 (6%)
Query: 56 ILFQAFNWESHKHN--WWSNLEEKVVDLAQSGFTSAWLPPPTQSLSPEGYLPQNLYCLDS 113
+LFQ+FNWES K ++++L + D+A +G T WLPPP+QS++PEGYLP LY L+S
Sbjct: 27 LLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNS 86
Query: 114 C-YGSLHDLQALLRKMKEHNVRAMADVVINHRVGTTQGSNGMYNRYDGIP----VSWDEH 168
YGS +L++L++ + + ++A+AD+VINHR + Y ++G + WD
Sbjct: 87 SKYGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPS 146
Query: 169 AVTSCSG---GKGNESTGDNFDGVPNIDHTQPFVRKDIIDWLIWLRESIGFQDFRFDFTK 225
V G GN TG +FDG P+IDH P V+K++ +W+ WL+ IGF +RFD+ +
Sbjct: 147 FVCRNDPKFPGTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKTEIGFHGWRFDYVR 206
Query: 226 GYAAKFVKEYIEQSKPLFAVGEYWDSCEYSPPDYRLNYNQDKHRQRIINWMDST-GGLCA 284
GYA+ K Y++ + P FAVGE WD +Y D +L+Y+Q++HR + W++ GG+
Sbjct: 207 GYASSITKLYVQNTSPDFAVGEKWDDMKYG-GDGKLDYDQNEHRSGLKQWIEEAGGGVLT 265
Query: 285 AFDFTTKGILQEAVKGELWRLRDPEGKPPGVMGWWPSRSVTFVENHDTGSTQGHWPFPSD 344
AFDFTTKGILQ AVKGELWRL+D +GKPPG++G P +VTF++NHDT T W FPSD
Sbjct: 266 AFDFTTKGILQSAVKGELWRLKDSQGKPPGMIGIMPGNAVTFIDNHDTFRT---WVFPSD 322
Query: 345 HIMEGYAYILTHPGIPTVFYDHF--YGKDDSFHGGIAKLMEIRKCQDIHSRSAVKILEAS 402
++ GY YILTHPG P +FY+H+ +G +S I+KL+ IR I S S+V I A
Sbjct: 323 KVLLGYVYILTHPGTPCIFYNHYIEWGLKES----ISKLVAIRNKNGIGSTSSVTIKAAE 378
Query: 403 SDLYSAIVDDKLCMKIGD----GSWCPSGPEWKLAASGDRYAVWHK 444
+DLY A++DDK+ MKIG G+ PS + LA SG +AVW K
Sbjct: 379 ADLYLAMIDDKVIMKIGPKQDVGTLVPS--NFALAYSGLDFAVWEK 422
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,508,949
Number of extensions: 586338
Number of successful extensions: 1240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 3
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)