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Os01g0715400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase family 13 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0235) R2 : 0.85
β1 : -0.84 (0.0863) R2dD : 0.0289 R2D : -0.0262
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.77 (0.0596) R2dE : 0.699 R2E : 0.667
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.02 (0.0503) R2dN8 : 0.18 R2N8 : 0.108
σ : 0.441
deviance : 89.47
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C
peak time of C : --
E
wheather : temperature
threshold : 20.48
memory length : 348
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.67
open length of G : 5.57

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.84 0.42 9.74 -0.871 0.674 -2.4 -0.517 -0.27 -1.01 1.69 20.72 307 5.98 5.23
79.28 0.415 9.74 -0.855 0.684 -2.41 -0.378 -- -0.989 1.68 20.8 318 5.9 5.21
79.77 0.416 9.73 -0.815 0.675 -2.39 -- 0.163 -0.989 1.65 20.74 323 5.9 5.12
79.75 0.416 9.74 -0.838 0.707 -2.39 -- -- -0.992 1.68 20.78 320 5.87 5.2
91.58 0.446 9.7 -0.703 -- -2.54 -- 0.112 -0.923 -- 20.4 353 5.7 5.66
178.73 0.627 9.78 -1.04 2.28 -- 0.242 -- -1.04 0.114 -- -- -- --
178.98 0.626 9.78 -1.05 2.28 -- -- -- -1.05 0.113 -- -- -- --
89.47 0.441 9.75 -0.84 -- -2.77 -- -- -1.02 -- 20.48 348 5.67 5.57
98.55 0.462 9.74 -- 0.703 -2.44 -- -- -0.922 1.84 20.8 324 5.85 5.18
507.25 1.05 9.74 -0.979 -- -- -- -- -1.01 -- -- -- -- --
208.15 0.675 9.76 -- 2.27 -- -- -- -0.928 0.0872 -- -- -- --
105.57 0.479 9.71 -- -- -2.77 -- -- -0.895 -- 20.7 360 5.73 5.35
532.54 1.08 9.71 -- -- -- -- -- -0.903 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.11 temperature 10.0 270 > th dose dependent rect. 6 5
2 89.98 temperature 20.0 270 > th dose independent rect. 6 5
3 91.03 temperature 10.0 270 > th dose dependent rect. 5 7
11 95.24 temperature 10.0 270 > th dose dependent rect. 12 18
13 95.73 wind 1.0 270 > th dose independent rect. 5 8
15 96.38 precipitation 0.1 270 < th dose independent rect. 13 16
16 96.38 precipitation 0.1 270 < th dose dependent rect. 13 16
19 96.84 humidity 50.0 270 > th dose independent rect. 5 8
20 96.88 wind 9.0 270 < th dose independent rect. 5 8
22 96.92 precipitation 0.1 270 < th dose independent rect. 1 16
23 96.92 precipitation 0.1 270 < th dose dependent rect. 1 16
24 97.06 atmosphere 1010.0 270 < th dose independent rect. 24 7
25 97.12 temperature 15.0 270 > th dose independent rect. 13 16
26 97.17 precipitation 0.1 270 < th dose independent rect. 5 8
27 97.17 precipitation 0.1 270 < th dose dependent rect. 5 8
28 97.28 temperature 10.0 270 > th dose independent rect. 5 8
29 97.28 atmosphere 995.0 270 > th dose independent rect. 5 8
30 97.28 atmosphere 1015.0 270 < th dose independent rect. 5 8
32 97.32 humidity 50.0 270 > th dose independent rect. 19 16
33 97.33 wind 9.0 270 < th dose independent rect. 13 16
34 97.33 radiation 20.0 270 < th dose dependent rect. 16 9
38 97.48 precipitation 0.1 270 < th dose independent rect. 24 6
39 97.48 temperature 10.0 270 > th dose independent rect. 17 8
40 97.48 radiation 20.0 270 < th dose independent rect. 17 8
43 97.48 temperature 10.0 270 > th dose independent rect. 1 16
44 97.48 atmosphere 1015.0 270 < th dose independent rect. 1 16
45 97.48 precipitation 0.1 270 < th dose dependent rect. 24 6
46 97.50 precipitation 0.1 270 < th dose independent rect. 11 8
47 97.50 precipitation 0.1 270 < th dose dependent rect. 11 8
51 97.66 wind 7.0 270 < th dose independent rect. 24 6
52 97.78 wind 9.0 270 < th dose independent rect. 17 8
53 97.80 wind 1.0 270 > th dose independent rect. 6 5
57 97.91 wind 9.0 270 < th dose dependent rect. 24 6
61 98.10 wind 9.0 270 < th dose independent rect. 19 16
62 98.11 wind 1.0 270 > th dose independent rect. 11 8
64 98.14 temperature 10.0 270 > th dose independent rect. 11 8
65 98.14 atmosphere 1015.0 270 < th dose independent rect. 11 8
66 98.14 temperature 10.0 270 > th dose independent rect. 19 16
67 98.14 atmosphere 995.0 270 > th dose independent rect. 19 16
73 98.30 temperature 15.0 270 > th dose independent rect. 24 6
76 98.32 temperature 30.0 270 < th dose independent rect. 24 6
77 98.32 humidity 50.0 270 > th dose independent rect. 24 6
80 98.32 atmosphere 995.0 270 > th dose independent rect. 24 6
81 98.32 radiation 20.0 270 < th dose independent rect. 24 6
84 98.32 temperature 10.0 270 > th dose independent rect. 6 18
85 98.34 radiation 40.0 270 < th dose dependent rect. 24 7
86 98.35 humidity 50.0 270 > th dose independent rect. 17 8
89 98.38 atmosphere 995.0 270 > th dose independent rect. 17 8
93 98.57 wind 9.0 270 < th dose independent rect. 1 16
108 98.83 wind 9.0 270 < th dose independent rect. 6 18
115 99.09 wind 9.0 270 < th dose independent rect. 11 8
191 100.68 temperature 10.0 10 > th dose dependent rect. 14 18
193 100.81 radiation 1.0 270 > th dose independent rect. 6 6
205 101.06 temperature 30.0 270 < th dose independent rect. 19 16
217 101.41 precipitation 0.1 270 < th dose independent rect. 17 8
218 101.41 precipitation 0.1 270 < th dose dependent rect. 17 8
222 101.50 humidity 50.0 270 > th dose dependent rect. 24 6
227 101.65 temperature 10.0 270 > th dose dependent rect. 24 6
228 101.72 precipitation 0.1 270 < th dose independent rect. 6 18
229 101.72 precipitation 0.1 270 < th dose dependent rect. 6 18
234 101.83 atmosphere 995.0 270 > th dose independent rect. 1 16
235 101.86 precipitation 0.1 270 < th dose independent rect. 19 16
236 101.86 precipitation 0.1 270 < th dose dependent rect. 19 16
254 102.08 radiation 1.0 270 < th dose dependent rect. 1 9
268 102.54 wind 7.0 10 < th dose independent rect. 2 6
272 102.62 precipitation 0.1 10 < th dose independent rect. 2 6
273 102.62 precipitation 0.1 10 < th dose dependent rect. 2 6
288 102.80 wind 1.0 270 > th dose independent rect. 6 18
290 102.83 wind 9.0 10 < th dose dependent rect. 2 6
309 103.03 temperature 10.0 10 > th dose independent rect. 2 6
311 103.03 temperature 30.0 10 < th dose independent rect. 2 6
312 103.03 humidity 50.0 10 > th dose independent rect. 2 6
314 103.03 atmosphere 995.0 10 > th dose independent rect. 2 6
315 103.03 atmosphere 1015.0 10 < th dose independent rect. 2 6
316 103.03 temperature 10.0 10 > th dose independent rect. 8 18
328 103.23 atmosphere 995.0 270 > th dose independent rect. 6 18
378 103.73 wind 9.0 10 < th dose independent rect. 8 18
386 103.76 radiation 1.0 270 < th dose independent rect. 1 9
404 103.91 radiation 40.0 10 < th dose independent rect. 2 6
410 104.01 temperature 20.0 270 > th dose independent rect. 8 1
415 104.03 temperature 10.0 10 > th dose dependent rect. 2 6
432 104.26 radiation 1.0 270 < th dose dependent sin 5 NA
435 104.28 temperature 30.0 270 < th dose independent rect. 6 5
436 104.28 atmosphere 1015.0 270 < th dose independent rect. 12 18
437 104.30 temperature 10.0 270 > th dose dependent rect. 8 1
447 104.46 temperature 10.0 10 > th dose dependent rect. 8 5
478 104.85 precipitation 0.1 10 < th dose independent rect. 8 18
479 104.85 precipitation 0.1 10 < th dose dependent rect. 8 18
552 105.25 wind 1.0 270 > th dose independent rect. 19 16
559 105.31 humidity 50.0 270 > th dose independent rect. 6 18
570 105.54 wind 9.0 1440 < th dose independent rect. 3 6
571 105.54 temperature 10.0 1440 > th dose independent rect. 3 6
574 105.54 humidity 50.0 1440 > th dose independent rect. 3 6
576 105.54 atmosphere 995.0 1440 > th dose independent rect. 3 6
577 105.54 temperature 10.0 1440 > th dose independent rect. 9 18
588 105.69 temperature 15.0 10 > th dose independent rect. 14 18
649 106.48 atmosphere 995.0 10 > th dose independent rect. 8 18
651 106.51 atmosphere 995.0 270 > th dose independent rect. 13 16
657 106.57 atmosphere 995.0 270 > th dose independent rect. 12 18
658 106.58 radiation 1.0 270 < th dose dependent rect. 11 14
664 106.62 humidity 50.0 270 > th dose dependent rect. 17 8
671 106.71 atmosphere 995.0 270 > th dose independent rect. 11 8
679 106.82 radiation 40.0 90 < th dose independent rect. 13 18
708 107.08 radiation 1.0 270 > th dose independent sin 5 NA
709 107.08 temperature 20.0 10 > th dose independent rect. 8 6
718 107.24 radiation 1.0 270 < th dose independent sin 5 NA
722 107.30 radiation 1.0 270 > th dose independent rect. 11 19
735 107.41 temperature 30.0 270 < th dose independent rect. 17 8
764 107.79 radiation 40.0 270 < th dose independent rect. 19 16
771 107.84 humidity 50.0 30 > th dose dependent rect. 2 6
790 108.07 humidity 50.0 270 > th dose dependent rect. 6 19
821 108.39 humidity 50.0 10 > th dose independent rect. 8 18
849 108.60 temperature 10.0 270 > th dose dependent rect. 11 8
851 108.61 humidity 90.0 270 < th dose independent rect. 11 8
859 108.63 radiation 40.0 270 < th dose independent rect. 7 17
871 108.74 wind 9.0 10 < th dose independent rect. 8 6
894 108.96 temperature 10.0 10 > th dose independent rect. 8 6
896 108.96 atmosphere 995.0 10 > th dose independent rect. 8 6
897 108.96 atmosphere 1015.0 10 < th dose independent rect. 8 6
898 108.96 precipitation 0.1 10 < th dose independent rect. 8 6
900 108.96 precipitation 0.1 10 < th dose dependent rect. 8 6
923 109.17 wind 9.0 10 < th dose independent rect. 14 18
947 109.31 wind 1.0 270 > th dose independent rect. 17 8
955 109.41 precipitation 0.1 10 < th dose independent rect. 14 18
956 109.41 precipitation 0.1 10 < th dose dependent rect. 14 18
996 109.56 humidity 50.0 270 > th dose dependent rect. 7 4