BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0715400 Os01g0715400|AK065152
(561 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888 829 0.0
AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414 414 e-116
AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424 340 1e-93
>AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888
Length = 887
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/575 (69%), Positives = 462/575 (80%), Gaps = 21/575 (3%)
Query: 3 WEIPPEPHPPATKIFRQKALQTMLQQKADGTGNSLSFLLDGEYSGLIFVVKLDEYTWLRN 62
WEIP EP+P T +F+ KAL+T LQ+K DG G+ F LDG+ GL FV+KL+E TWL
Sbjct: 317 WEIPSEPYPEETSLFKNKALRTRLQRKDDGNGSFGLFSLDGKLEGLCFVLKLNENTWLNY 376
Query: 63 VENGFDFYIPL---------TRXXXXXXXXXXXXXXXXXXG----LISDIRNLVVGLSSR 109
G DFY+P T G +I++IRNL + +SS
Sbjct: 377 --RGEDFYVPFLTSSSSPVETEAAQVSKPKRKTDKEVSASGFTKEIITEIRNLAIDISSH 434
Query: 110 RGQRAKNKVLQEDILQEIERLAAEAYSIFRSPTIDTVEESVYIDDSSIVKP---ACSGTG 166
+ Q+ K +QE+ILQEIE+LAAEAYSIFRS T EE V ++ KP SGTG
Sbjct: 435 KNQKTNVKEVQENILQEIEKLAAEAYSIFRSTTPAFSEEGVL--EAEADKPDIKISSGTG 492
Query: 167 SGFEILCQGFNWESHKSGKWYVELGSKAKELSSMGFTIVWSPPPTDSVSPEGYMPRDLYN 226
SGFEILCQGFNWES+KSG+WY+EL KA EL+S+GFT++W PPPT+SVSPEGYMP+DLYN
Sbjct: 493 SGFEILCQGFNWESNKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYN 552
Query: 227 LNSRYGTMEELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVWNIFGGRLNWDDRAVV 286
LNSRYGT++ELK+ VK+FH+ G+KVLGDAVLNHRCA F+NQNGVWN+FGGRLNWDDRAVV
Sbjct: 553 LNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLFGGRLNWDDRAVV 612
Query: 287 ADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFW 346
ADDPHFQGRGNKSSGDNFHAAPNIDHSQ+FVR D+KEWLCWM +EVGYDGWRLDFVRGFW
Sbjct: 613 ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGFW 672
Query: 347 GGYVHDYLEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTT 406
GGYV DY++AS+PYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINAT+G AGAFDVTT
Sbjct: 673 GGYVKDYMDASKPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATSGAAGAFDVTT 732
Query: 407 KGILHSALERSEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPFGMELQG 466
KGILH+AL++ EYWRLSD KGKPPGV+GWWPSRAVTFIENHDTGSTQGHWRFP G E+QG
Sbjct: 733 KGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQG 792
Query: 467 YVYILTHPGTPAIFYDHIFSHLQPEIAKLISIRNRQKIHCRSKIKILKAEGNLYAAEIDE 526
Y YILTHPGTPA+F+DHIFS EIA L+S+RNRQK+HCRS++ I K+E ++YAA IDE
Sbjct: 793 YAYILTHPGTPAVFFDHIFSDYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVYAAIIDE 852
Query: 527 RVTMKIGAGHFE-PSGPTNWVVAAEGQDYKVWEVS 560
+V MKIG GH+E P+G NW VA EG+DYKVWE S
Sbjct: 853 KVAMKIGPGHYEPPNGSQNWSVAVEGRDYKVWETS 887
>AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414
Length = 413
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/395 (49%), Positives = 268/395 (67%), Gaps = 10/395 (2%)
Query: 168 GFEILCQGFNWESHKSGKWYVELGSKAKELSSMGFTIVWSPPPTDSVSPEGYMPRDLYNL 227
G E++ Q +NWESHK W+ L K +++ GFT W PPP+ S++PEGY+P+DLY+L
Sbjct: 24 GREVILQAYNWESHKY-DWWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSL 82
Query: 228 NSRYGTMEELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVWNIFGG-RLNWDDRAVV 286
NS YG+ LK +++ + ++ + D V+NHR + G++N + G L WD+ AV
Sbjct: 83 NSAYGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGISLPWDEHAVT 142
Query: 287 ADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFW 346
+ G GN+S+GDNF+ PN+DH+Q FVR D+ WL W+R VG+ +R DF RG+
Sbjct: 143 SCT---GGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFDFARGYS 199
Query: 347 GGYVHDYLEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTT 406
YV +Y+ A++P F+VGE WDS +Y +DYNQD+HRQRI+ WI+AT + AFD TT
Sbjct: 200 ANYVKEYIGAAKPLFSVGECWDSCNYNGHGLDYNQDSHRQRIISWIDATGQISAAFDFTT 259
Query: 407 KGILHSALERSEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPFGMELQG 466
KGIL A+ + +YWRL D +GKPPGV+GWWPSRAVTF++NHDTGSTQ HW FP ++G
Sbjct: 260 KGILQEAV-KGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSHHVMEG 318
Query: 467 YVYILTHPGTPAIFYDHIF---SHLQPEIAKLISIRNRQKIHCRSKIKILKAEGNLYAAE 523
Y YILTHPG P +FYDH + S + +I KLI IR RQ IH RS +++LKAE NLYAA
Sbjct: 319 YAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIHSRSTVRVLKAESNLYAAI 378
Query: 524 IDERVTMKIGAGHFEPSGPTNWVVAAEGQDYKVWE 558
+ E++ MK+G G + PSG +W +A G Y VW
Sbjct: 379 VGEKICMKLGDGSWCPSG-RDWTLATSGHRYAVWH 412
>AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424
Length = 423
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 247/399 (61%), Gaps = 15/399 (3%)
Query: 171 ILCQGFNWES-HKSGKWYVELGSKAKELSSMGFTIVWSPPPTDSVSPEGYMPRDLYNLNS 229
+L Q FNWES K G +Y L + ++++ G T +W PPP+ SV+PEGY+P LY+LNS
Sbjct: 27 LLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNS 86
Query: 230 -RYGTMEELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVWNIFGG-----RLNWDDR 283
+YG+ ELK +K ++ G+K L D V+NHR A+ ++ + F G RL+WD
Sbjct: 87 SKYGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPS 146
Query: 284 AVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVR 343
V +DP F G GN +G +F AP+IDH V+ +L EW+ W++ E+G+ GWR D+VR
Sbjct: 147 FVCRNDPKFPGTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKTEIGFHGWRFDYVR 206
Query: 344 GFWGGYVHDYLEASEPYFAVGEYWDSLSY-TYGEMDYNQDAHRQRIVDWI-NATNGTAGA 401
G+ Y++ + P FAVGE WD + Y G++DY+Q+ HR + WI A G A
Sbjct: 207 GYASSITKLYVQNTSPDFAVGEKWDDMKYGGDGKLDYDQNEHRSGLKQWIEEAGGGVLTA 266
Query: 402 FDVTTKGILHSALERSEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPFG 461
FD TTKGIL SA+ + E WRL D +GKPPG++G P AVTFI+NHDT T W FP
Sbjct: 267 FDFTTKGILQSAV-KGELWRLKDSQGKPPGMIGIMPGNAVTFIDNHDTFRT---WVFPSD 322
Query: 462 MELQGYVYILTHPGTPAIFYDHIFS-HLQPEIAKLISIRNRQKIHCRSKIKILKAEGNLY 520
L GYVYILTHPGTP IFY+H L+ I+KL++IRN+ I S + I AE +LY
Sbjct: 323 KVLLGYVYILTHPGTPCIFYNHYIEWGLKESISKLVAIRNKNGIGSTSSVTIKAAEADLY 382
Query: 521 AAEIDERVTMKIGAGH-FEPSGPTNWVVAAEGQDYKVWE 558
A ID++V MKIG P+N+ +A G D+ VWE
Sbjct: 383 LAMIDDKVIMKIGPKQDVGTLVPSNFALAYSGLDFAVWE 421
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,546,966
Number of extensions: 605134
Number of successful extensions: 1414
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1397
Number of HSP's successfully gapped: 3
Length of query: 561
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 457
Effective length of database: 8,255,305
Effective search space: 3772674385
Effective search space used: 3772674385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)