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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0457800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-amylase isozyme 3C precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.74 (0.0143) R2 : 0.000164
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00826 (0.0302) R2dN8 : 0.000212 R2N8 : 0.000164
σ : 0.27
deviance : 33.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.46 0.268 2.73 0.0828 0.013 -0.0992 -0.137 0.011 0.0566 10.3 25.23 167 -- --
32.46 0.265 2.73 0.0807 0.0128 -0.0989 -0.139 -- 0.0564 10.2 25.3 167 -- --
32.52 0.266 2.73 0.0722 0.0198 -0.106 -- -0.00737 0.0595 13.4 25.24 167 -- --
32.52 0.266 2.73 0.0773 0.0212 -0.108 -- -- 0.0596 13.8 25.26 167 -- --
32.54 0.266 2.73 0.0767 -- -0.101 -- 0.00205 0.0568 -- 25.24 167 -- --
33.13 0.27 2.74 0.046 0.0665 -- 0.00668 -- 0.012 5.06 -- -- -- --
33.13 0.27 2.74 0.0461 0.0666 -- -- -- 0.0119 5.12 -- -- -- --
32.54 0.266 2.73 0.0742 -- -0.0997 -- -- 0.0559 -- 25.2 167 -- --
32.67 0.266 2.74 -- 0.0146 -0.0971 -- -- 0.0466 12.2 25.29 167 -- --
33.37 0.27 2.74 0.0484 -- -- -- -- 0.0136 -- -- -- -- --
33.19 0.269 2.74 -- 0.0674 -- -- -- 0.00682 5.09 -- -- -- --
32.69 0.266 2.74 -- -- -0.0935 -- -- 0.0449 -- 25.29 167 -- --
33.43 0.27 2.74 -- -- -- -- -- 0.00826 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.58 humidity 90.0 10 < th dose dependent rect. 4 1
3 30.67 humidity 90.0 10 < th dose dependent rect. 3 3
5 30.69 humidity 80.0 90 < th dose independent rect. 2 3
6 30.69 humidity 80.0 90 < th dose dependent rect. 2 3
12 30.83 humidity 90.0 10 < th dose independent rect. 3 3
19 30.88 humidity 80.0 10 < th dose independent rect. 3 1
106 31.50 precipitation 0.1 270 > th dose dependent rect. 17 1
111 31.54 precipitation 0.1 270 > th dose independent rect. 17 1
118 31.58 wind 3.0 10 > th dose dependent rect. 3 1
129 31.71 wind 1.0 10 < th dose dependent rect. 4 1
130 31.71 temperature 20.0 270 < th dose dependent rect. 2 1
133 31.74 atmosphere 1005.0 90 > th dose dependent rect. 3 2
138 31.78 atmosphere 1000.0 270 < th dose independent rect. 16 1
145 31.79 atmosphere 1000.0 270 < th dose dependent rect. 16 1
165 31.85 temperature 20.0 10 < th dose independent rect. 9 11
170 31.85 temperature 20.0 270 < th dose dependent rect. 24 4
174 31.86 temperature 20.0 10 < th dose independent rect. 19 1
199 31.87 wind 5.0 10 > th dose independent rect. 24 6
204 31.87 wind 5.0 10 > th dose dependent rect. 24 6
210 31.88 wind 5.0 10 > th dose independent rect. 24 2
212 31.88 precipitation 0.1 90 > th dose independent rect. 23 2
221 31.88 wind 5.0 10 > th dose dependent rect. 24 2
223 31.88 precipitation 0.1 90 > th dose dependent rect. 23 2
230 31.89 precipitation 0.1 720 > th dose independent rect. 22 1
236 31.89 precipitation 0.1 720 > th dose dependent rect. 22 1
256 31.91 atmosphere 1005.0 10 > th dose dependent rect. 3 2
278 31.94 precipitation 0.1 270 > th dose independent rect. 16 3
281 31.94 temperature 10.0 30 > th dose dependent rect. 5 23
364 32.02 humidity 80.0 30 > th dose dependent rect. 4 1
370 32.03 humidity 90.0 30 > th dose independent rect. 4 1
374 32.03 atmosphere 1010.0 30 < th dose dependent rect. 4 1
375 32.03 radiation 1.0 30 < th dose dependent rect. 4 1
381 32.04 wind 3.0 30 < th dose independent rect. 4 1
384 32.04 atmosphere 1005.0 30 > th dose independent rect. 4 1
385 32.04 temperature 30.0 30 < th dose dependent rect. 4 1
386 32.04 humidity 50.0 30 > th dose dependent rect. 4 1
392 32.04 temperature 20.0 90 < th dose dependent rect. 2 9
403 32.05 temperature 10.0 30 > th dose independent rect. 4 1
406 32.05 temperature 30.0 30 < th dose independent rect. 4 1
407 32.05 humidity 50.0 30 > th dose independent rect. 4 1
411 32.05 atmosphere 995.0 30 > th dose independent rect. 4 1
413 32.05 atmosphere 1010.0 30 < th dose independent rect. 4 1
415 32.05 radiation 1.0 30 < th dose independent rect. 4 1
420 32.05 precipitation 0.1 30 < th dose independent rect. 4 1
428 32.05 temperature 10.0 30 > th dose independent rect. 5 23
430 32.05 temperature 10.0 30 > th dose dependent rect. 4 1
434 32.05 precipitation 0.1 30 < th dose dependent rect. 4 1
440 32.06 temperature 20.0 10 < th dose independent rect. 3 18
441 32.06 atmosphere 995.0 30 > th dose independent rect. 5 23
444 32.06 atmosphere 995.0 30 > th dose dependent rect. 4 1
472 32.08 precipitation 0.1 30 < th dose independent rect. 5 23
475 32.08 precipitation 0.1 30 < th dose dependent rect. 5 23
569 32.13 temperature 25.0 720 < th dose dependent rect. 16 3
583 32.15 wind 3.0 10 > th dose independent rect. 3 1
593 32.16 temperature 20.0 270 < th dose independent rect. 1 2
608 32.16 wind 9.0 30 < th dose independent rect. 5 23
610 32.16 temperature 25.0 90 < th dose dependent rect. 16 4
652 32.17 precipitation 0.1 270 > th dose dependent rect. 20 22
669 32.20 atmosphere 1005.0 270 > th dose dependent rect. 1 4
674 32.21 atmosphere 1005.0 10 < th dose independent rect. 20 1
686 32.21 temperature 25.0 720 < th dose dependent rect. 13 7
689 32.22 temperature 20.0 270 < th dose independent rect. 24 4
712 32.23 temperature 25.0 10 < th dose dependent rect. 16 5
721 32.24 temperature 20.0 10 < th dose independent rect. 6 15
738 32.25 humidity 80.0 1440 > th dose independent rect. 2 1
742 32.25 wind 5.0 1440 < th dose independent rect. 20 2
768 32.25 radiation 10.0 14400 < th dose dependent rect. 21 7
776 32.26 wind 5.0 1440 > th dose independent rect. 20 2
791 32.26 temperature 25.0 10 < th dose dependent rect. 14 7
826 32.28 temperature 20.0 10 < th dose independent sin 22 NA
831 32.28 wind 3.0 1440 > th dose dependent rect. 20 1
879 32.30 wind 7.0 1440 < th dose independent rect. 5 1
881 32.30 temperature 10.0 1440 > th dose independent rect. 5 1
884 32.30 temperature 30.0 1440 < th dose independent rect. 5 1
888 32.30 humidity 50.0 1440 > th dose independent rect. 5 1
897 32.30 atmosphere 995.0 1440 > th dose independent rect. 5 1
898 32.30 atmosphere 1015.0 1440 < th dose independent rect. 5 1
899 32.30 radiation 20.0 1440 < th dose independent rect. 5 1
920 32.30 temperature 20.0 10 > th dose independent rect. 5 23
921 32.30 temperature 10.0 1440 > th dose independent rect. 6 23
927 32.30 wind 1.0 90 > th dose dependent rect. 3 3
962 32.31 temperature 30.0 270 < th dose dependent rect. 13 16
979 32.32 humidity 50.0 30 > th dose independent rect. 5 23