Os06g0713800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alpha-amylase isozyme 2A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase).
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Os06g0713800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alpha-amylase isozyme 2A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.6 | 0.628 | 5.95 | 0.289 | 1.28 | 1.31 | -0.061 | -2.73 | 0.548 | 1.66 | 33.22 | 1051 | -- | -- |
| 179.28 | 0.624 | 5.94 | 0.642 | 1.28 | 0.999 | 0.0185 | -- | 0.497 | 1.55 | 33.1 | 1062 | -- | -- |
| 178.59 | 0.622 | 5.94 | 0.319 | 1.28 | 1.28 | -- | -2.49 | 0.55 | 1.66 | 33.1 | 1051 | -- | -- |
| 178.98 | 0.623 | 5.93 | 0.66 | 1.28 | 0.967 | -- | -- | 0.523 | 1.57 | 33 | 1058 | -- | -- |
| 274.82 | 0.772 | 5.9 | 0.496 | -- | 1.37 | -- | -1.15 | 0.631 | -- | 32.72 | 1057 | -- | -- |
| 224.43 | 0.702 | 5.94 | 0.89 | 1.42 | -- | 0.218 | -- | 0.391 | 1.55 | -- | -- | -- | -- |
| 224.62 | 0.702 | 5.94 | 0.882 | 1.42 | -- | -- | -- | 0.389 | 1.57 | -- | -- | -- | -- |
| 274.66 | 0.772 | 5.88 | 0.652 | -- | 1.23 | -- | -- | 0.625 | -- | 32.21 | 1073 | -- | -- |
| 190.13 | 0.642 | 5.91 | -- | 1.27 | 1.06 | -- | -- | 0.496 | 1.66 | 32.9 | 1057 | -- | -- |
| 347.79 | 0.871 | 5.92 | 0.939 | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
| 245.14 | 0.732 | 5.96 | -- | 1.43 | -- | -- | -- | 0.291 | 1.59 | -- | -- | -- | -- |
| 285.45 | 0.787 | 5.89 | -- | -- | 1.32 | -- | -- | 0.574 | -- | 31.95 | 1086 | -- | -- |
| 371.07 | 0.899 | 5.95 | -- | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.83 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 2 | 170.37 | humidity | 70.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 8 | 171.89 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 13 | 172.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 16 | 172.95 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 14 |
| 17 | 173.01 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 19 | 173.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 25 | 173.86 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 24 | 10 |
| 33 | 174.56 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 37 | 174.99 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 40 | 175.03 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 44 | 175.14 | humidity | 80.0 | 90 | < th | dose independent | rect. | 22 | 17 |
| 57 | 175.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 61 | 175.69 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 68 | 175.89 | humidity | 90.0 | 90 | < th | dose independent | sin | 4 | NA |
| 74 | 176.02 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 78 | 176.11 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 87 | 176.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 89 | 176.41 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 123 | 177.10 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 134 | 177.20 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 9 |
| 153 | 177.67 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 191 | 178.27 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 10 |
| 195 | 178.29 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 201 | 178.39 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 228 | 178.73 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 248 | 178.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 283 | 179.17 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 284 | 179.17 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 294 | 179.31 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 323 | 179.53 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 324 | 179.53 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 380 | 179.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 387 | 180.02 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 395 | 180.08 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 14 |
| 398 | 180.09 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 417 | 180.26 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 425 | 180.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 437 | 180.46 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 485 | 180.72 | humidity | 80.0 | 90 | > th | dose independent | sin | 4 | NA |
| 507 | 180.88 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 535 | 180.96 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 576 | 181.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 610 | 181.53 | radiation | 10.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 618 | 181.62 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 649 | 181.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 682 | 181.99 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 705 | 182.13 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 858 | 182.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 860 | 182.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 865 | 182.74 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 871 | 182.76 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 17 |
| 874 | 182.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 879 | 182.80 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 881 | 182.80 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 887 | 182.83 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 888 | 182.83 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 905 | 182.87 | wind | 1.0 | 90 | > th | dose independent | rect. | 21 | 17 |
| 944 | 182.98 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 946 | 182.98 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |