BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0713800 Os06g0713800|X64619
(445 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424 503 e-143
AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888 372 e-103
AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414 360 e-100
>AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424
Length = 423
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 236/404 (58%), Positives = 300/404 (74%), Gaps = 8/404 (1%)
Query: 24 ILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDA 83
+LFQ FNWESW++ GG+YN L +DDI AG+TH+WLPPPS SV+ +GY+PG+LYDL++
Sbjct: 27 LLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNS 86
Query: 84 SRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLDWGPH 143
S+YG+ ELKSLI AL+ KGI+A+AD+VINHR A+ KD + YC FEGGT D RLDW P
Sbjct: 87 SKYGSEAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPS 146
Query: 144 MICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAWRLDF 203
+CR+D +F GTGNLDTG DF APDIDHLN VQ+EL++W+ WLK+ E+GF WR D+
Sbjct: 147 FVCRNDPKFP-GTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKT-EIGFHGWRFDY 204
Query: 204 ARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRVGGTA 263
RGY+ + K+Y++ T+P AV E WD M YGGDGK +Y+Q+ HR L W++ GG
Sbjct: 205 VRGYASSITKLYVQNTSP-DFAVGEKWDDMKYGGDGKLDYDQNEHRSGLKQWIEEAGGGV 263
Query: 264 SAGMVFDFTTKGIMNTAVEGELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGSTQQMWP 323
FDFTTKGI+ +AV+GELWRL D QGK PG+IG P AVTF+DNHDT T W
Sbjct: 264 LTA--FDFTTKGILQSAVKGELWRLKDSQGKPPGMIGIMPGNAVTFIDNHDTFRT---WV 318
Query: 324 FPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHD 383
FPSDKV+ GY YILTHPG PCIFY+H+ +WGLKE I+ LVA+R +NG+ +TSS+ I +
Sbjct: 319 FPSDKVLLGYVYILTHPGTPCIFYNHYIEWGLKESISKLVAIRNKNGIGSTSSVTIKAAE 378
Query: 384 ADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWEK 427
AD Y+A ID KV+MKIG + DV +L+P F LA G +AVWEK
Sbjct: 379 ADLYLAMIDDKVIMKIGPKQDVGTLVPSNFALAYSGLDFAVWEK 422
>AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888
Length = 887
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/408 (47%), Positives = 260/408 (63%), Gaps = 16/408 (3%)
Query: 20 SGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLY 79
SG +IL QGFNWES +SG WY L K D++ + G T +WLPPP+ SVS +GYMP LY
Sbjct: 493 SGFEILCQGFNWES-NKSGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLY 551
Query: 80 DLDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLD 139
+L+ SRYGT ELK + H GI+ + D V+NHRCA +K+ G++ +F GRL+
Sbjct: 552 NLN-SRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLF-----GGRLN 605
Query: 140 WGPHMICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAW 199
W + DD F G GN +G +F AAP+IDH V++++ +WL W+ +EVG+D W
Sbjct: 606 WDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMM-EEVGYDGW 663
Query: 200 RLDFARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRV 259
RLDF RG+ K Y++ + P AV E WDS++Y G+ +YNQDAHRQ +VDW++
Sbjct: 664 RLDFVRGFWGGYVKDYMDASKPY-FAVGEYWDSLSYTY-GEMDYNQDAHRQRIVDWINAT 721
Query: 260 GGTASAGMVFDFTTKGIMNTAVEG-ELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGST 318
G A A FD TTKGI++TA++ E WRL D +GK PGV+GWWP++AVTF++NHDTGST
Sbjct: 722 SGAAGA---FDVTTKGILHTALQKCEYWRLSDPKGKPPGVVGWWPSRAVTFIENHDTGST 778
Query: 319 QQMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLK 378
Q W FP K MQGYAYILTHPG P +F+DH F +IAAL+++R R + S +
Sbjct: 779 QGHWRFPEGKEMQGYAYILTHPGTPAVFFDHIFS-DYHSEIAALLSLRNRQKLHCRSEVN 837
Query: 379 IMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWE 426
I + D Y A ID KV MKIG + + +A G Y VWE
Sbjct: 838 IDKSERDVYAAIIDEKVAMKIGPGHYEPPNGSQNWSVAVEGRDYKVWE 885
>AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414
Length = 413
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/411 (45%), Positives = 262/411 (63%), Gaps = 25/411 (6%)
Query: 21 GDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYD 80
G +++ Q +NWES + W+ L GKV DI +G T WLPPPS S++ +GY+P LY
Sbjct: 24 GREVILQAYNWESHKYD--WWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYS 81
Query: 81 LDASRYGTSMELKSLISALHGKGIQAIADVVINHRCADYKDSRGIYCIFEGGTPDGRLDW 140
L+++ YG+ LKSL+ + ++A+AD+VINHR + G+Y ++G + L W
Sbjct: 82 LNSA-YGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYDGIS----LPW 136
Query: 141 GPHMICRDDTQFSDGTGNLDTGADFAAAPDIDHLNGVVQRELTDWLLWLKSDEVGFDAWR 200
H + T + G GN TG +F P++DH V++++ WL WL+ + VGF +R
Sbjct: 137 DEHAV----TSCTGGLGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLR-NTVGFQDFR 191
Query: 201 LDFARGYSPEVAKVYIEGTTPVGLAVAELWDSMAYGGDGKPEYNQDAHRQALVDWVDRVG 260
DFARGYS K YI P+ +V E WDS Y G G +YNQD+HRQ ++ W+D G
Sbjct: 192 FDFARGYSANYVKEYIGAAKPL-FSVGECWDSCNYNGHGL-DYNQDSHRQRIISWIDATG 249
Query: 261 GTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGKAPGVIGWWPAKAVTFVDNHDTGSTQQ 320
++A FDFTTKGI+ AV+G+ WRL D QGK PGV+GWWP++AVTF+DNHDTGSTQ
Sbjct: 250 QISAA---FDFTTKGILQEAVKGQYWRLCDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQA 306
Query: 321 MWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWG--LKEQIAALVAVRQRNGVTATSSLK 378
WPFPS VM+GYAYILTHPG PC+FYDHF+DWG + +QI L+ +R+R + + S+++
Sbjct: 307 HWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDWGSSIHDQIVKLIDIRRRQDIHSRSTVR 366
Query: 379 IMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPG--FHLAAHGNGYAVWEK 427
++ +++ Y A + K+ MK+G S P G + LA G+ YAVW K
Sbjct: 367 VLKAESNLYAAIVGEKICMKLGD----GSWCPSGRDWTLATSGHRYAVWHK 413
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,438,230
Number of extensions: 459120
Number of successful extensions: 880
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 3
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)