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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0765300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0383) R2 : 0.00713
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0807) R2dN8 : 0.00921 R2N8 : 0.00713
σ : 0.722
deviance : 239.32
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.89 0.703 3.09 -0.296 0.356 -0.846 0.641 -1.37 0.194 14.4 1.093 233 -- --
224.73 0.698 3.11 -0.318 0.364 -0.986 0.52 -- 0.194 14.5 1.098 232 -- --
225.09 0.699 3.09 -0.28 0.376 -0.91 -- -1.01 0.204 15 1.095 234 -- --
225.46 0.699 3.11 -0.31 0.376 -1.01 -- -- 0.201 15.3 1.1 232 -- --
232.09 0.71 3.1 -0.256 -- -0.596 -- -1.25 0.176 -- 1.093 234 -- --
233.12 0.716 3.12 -0.2 0.232 -- 0.686 -- 0.126 11.8 -- -- -- --
234.83 0.718 3.12 -0.17 0.242 -- -- -- 0.131 13 -- -- -- --
232.72 0.711 3.11 -0.281 -- -0.703 -- -- 0.173 -- 1.1 234 -- --
227.85 0.703 3.1 -- 0.37 -0.897 -- -- 0.226 15.1 1.061 232 -- --
238.47 0.722 3.12 -0.179 -- -- -- -- 0.126 -- -- -- -- --
235.59 0.718 3.11 -- 0.245 -- -- -- 0.15 13.1 -- -- -- --
234.72 0.714 3.11 -- -- -0.614 -- -- 0.195 -- 1.061 232 -- --
239.32 0.722 3.12 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.92 atmosphere 1000.0 10 < th dose independent rect. 5 1
8 208.92 atmosphere 1000.0 10 < th dose dependent rect. 5 1
31 215.91 wind 1.0 90 < th dose dependent rect. 5 1
34 218.39 wind 1.0 90 < th dose independent rect. 5 1
39 220.89 wind 1.0 30 < th dose dependent rect. 5 11
47 221.21 wind 1.0 30 < th dose dependent rect. 5 9
56 221.68 wind 1.0 270 < th dose independent rect. 10 20
61 222.15 wind 1.0 30 < th dose dependent rect. 5 6
83 222.70 wind 1.0 30 > th dose independent sin 1 NA
97 223.10 wind 1.0 270 > th dose independent rect. 12 23
100 223.17 wind 1.0 30 < th dose dependent rect. 13 5
106 223.22 wind 1.0 30 < th dose dependent rect. 13 3
122 223.44 wind 1.0 30 > th dose independent rect. 23 23
126 223.52 wind 1.0 30 < th dose independent rect. 13 5
135 223.57 wind 1.0 30 < th dose independent rect. 13 3
150 223.65 wind 1.0 30 < th dose dependent rect. 5 18
165 223.77 wind 1.0 30 < th dose dependent sin 2 NA
170 223.82 wind 1.0 30 < th dose independent rect. 5 11
178 223.85 radiation 10.0 720 < th dose dependent rect. 1 9
200 224.08 wind 1.0 30 < th dose independent sin 20 NA
201 224.13 wind 1.0 270 > th dose independent sin 16 NA
207 224.13 wind 1.0 270 < th dose dependent rect. 12 3
208 224.13 wind 1.0 30 < th dose dependent rect. 5 21
211 224.15 wind 1.0 30 < th dose independent sin 2 NA
212 224.18 wind 1.0 270 < th dose independent rect. 2 4
218 224.22 wind 1.0 30 < th dose independent rect. 5 9
227 224.27 wind 1.0 270 < th dose dependent rect. 10 20
228 224.28 wind 1.0 270 < th dose independent rect. 2 2
237 224.35 wind 1.0 30 < th dose dependent sin 20 NA
241 224.41 wind 1.0 30 > th dose independent rect. 13 23
249 224.52 radiation 10.0 4320 < th dose dependent rect. 23 1
252 224.56 wind 1.0 270 < th dose independent rect. 10 13
257 224.59 wind 1.0 270 < th dose independent sin 19 NA
284 224.83 wind 1.0 270 > th dose independent rect. 3 23
285 224.83 radiation 10.0 720 < th dose dependent rect. 18 16
294 224.90 precipitation 0.1 90 > th dose dependent rect. 14 3
299 224.94 wind 1.0 270 < th dose dependent rect. 10 13
301 224.97 precipitation 0.1 90 > th dose independent rect. 15 2
308 225.02 humidity 80.0 720 < th dose independent rect. 5 4
309 225.02 wind 1.0 270 < th dose independent rect. 10 11
311 225.03 wind 1.0 30 < th dose dependent rect. 2 13
313 225.04 humidity 80.0 720 > th dose independent rect. 24 10
317 225.05 wind 1.0 270 < th dose dependent sin 19 NA
345 225.15 radiation 10.0 720 < th dose dependent sin 9 NA
350 225.16 wind 1.0 30 > th dose independent rect. 15 23
355 225.18 radiation 10.0 720 < th dose dependent rect. 3 7
363 225.22 wind 1.0 270 < th dose independent rect. 12 3
364 225.22 wind 1.0 30 < th dose independent rect. 2 14
407 225.28 radiation 10.0 720 < th dose independent rect. 24 10
420 225.32 wind 1.0 270 < th dose independent rect. 24 21
424 225.33 wind 1.0 30 < th dose independent rect. 24 16
427 225.33 wind 1.0 270 < th dose dependent rect. 11 8
430 225.34 wind 1.0 270 < th dose independent rect. 10 6
442 225.36 wind 1.0 270 > th dose independent no NA NA
465 225.40 wind 1.0 30 < th dose independent rect. 5 21
478 225.44 wind 1.0 720 > th dose independent rect. 7 17
509 225.52 wind 1.0 30 > th dose independent no NA NA
513 225.53 wind 1.0 270 < th dose dependent rect. 3 1
517 225.54 wind 1.0 30 < th dose dependent rect. 24 16
526 225.56 humidity 90.0 720 > th dose independent rect. 3 2
542 225.63 wind 1.0 270 < th dose independent rect. 24 23
545 225.64 wind 9.0 1440 < th dose independent rect. 23 1
546 225.64 temperature 10.0 1440 > th dose independent rect. 23 1
549 225.64 temperature 30.0 1440 < th dose independent rect. 23 1
553 225.64 humidity 50.0 1440 > th dose independent rect. 23 1
563 225.64 atmosphere 995.0 1440 > th dose independent rect. 23 1
564 225.64 radiation 1.0 1440 < th dose independent rect. 23 1
585 225.64 wind 1.0 270 < th dose independent rect. 24 16
587 225.64 temperature 10.0 1440 > th dose independent rect. 24 23
596 225.65 humidity 50.0 720 > th dose dependent rect. 24 13
607 225.69 temperature 25.0 30 > th dose independent rect. 22 1
608 225.69 radiation 10.0 720 < th dose independent rect. 18 16
613 225.70 atmosphere 1005.0 30 > th dose independent rect. 22 1
615 225.70 radiation 10.0 720 < th dose dependent rect. 7 3
618 225.71 humidity 80.0 30 > th dose independent rect. 22 1
623 225.72 humidity 70.0 720 > th dose dependent rect. 1 9
636 225.74 humidity 90.0 30 < th dose independent rect. 22 1
653 225.77 wind 3.0 30 < th dose independent rect. 22 1
656 225.77 wind 5.0 30 < th dose dependent rect. 22 1
659 225.78 wind 1.0 30 > th dose independent rect. 23 12
662 225.79 precipitation 0.1 30 < th dose independent rect. 22 1
668 225.79 temperature 20.0 30 > th dose dependent rect. 22 1
669 225.79 precipitation 0.1 30 < th dose dependent rect. 22 1
674 225.80 atmosphere 1005.0 30 > th dose dependent rect. 22 1
683 225.82 atmosphere 995.0 30 > th dose dependent rect. 22 1
690 225.83 humidity 50.0 720 > th dose dependent rect. 24 15
708 225.86 radiation 10.0 720 < th dose dependent rect. 5 6
718 225.88 temperature 10.0 30 > th dose independent rect. 22 1
720 225.88 temperature 30.0 30 < th dose independent rect. 22 1
721 225.88 humidity 50.0 30 > th dose independent rect. 22 1
724 225.88 atmosphere 995.0 30 > th dose independent rect. 22 1
725 225.88 atmosphere 1010.0 30 < th dose independent rect. 22 1
727 225.88 radiation 1.0 30 < th dose independent rect. 22 1
733 225.88 temperature 10.0 30 > th dose independent rect. 23 23
734 225.88 radiation 1.0 30 < th dose dependent rect. 22 1
750 225.90 wind 3.0 30 < th dose dependent rect. 13 17
754 225.91 humidity 50.0 30 > th dose dependent rect. 22 1
757 225.92 wind 1.0 30 > th dose independent rect. 22 1
762 225.92 wind 3.0 30 < th dose dependent rect. 12 20
792 226.00 wind 1.0 30 > th dose independent rect. 1 23
814 226.04 wind 1.0 30 < th dose independent rect. 5 6
816 226.04 wind 1.0 270 > th dose independent rect. 22 23
868 226.15 wind 1.0 270 < th dose independent rect. 17 13
873 226.15 humidity 90.0 720 < th dose dependent rect. 23 10
892 226.19 atmosphere 1015.0 30 < th dose dependent rect. 22 1
894 226.20 radiation 10.0 720 < th dose independent rect. 8 2
895 226.20 wind 1.0 270 < th dose independent rect. 20 10
899 226.20 wind 1.0 270 > th dose independent rect. 20 23
900 226.20 wind 1.0 30 > th dose independent rect. 21 23
906 226.22 wind 1.0 270 > th dose independent sin 9 NA
921 226.24 humidity 90.0 30 < th dose dependent rect. 22 1
931 226.25 wind 1.0 30 < th dose independent rect. 11 21
947 226.27 wind 1.0 270 < th dose independent rect. 20 23
961 226.30 wind 1.0 30 < th dose independent rect. 13 19
963 226.30 humidity 90.0 720 < th dose dependent rect. 1 8
968 226.31 wind 1.0 270 < th dose independent no NA NA
970 226.31 wind 1.0 270 < th dose independent rect. 17 23
972 226.32 wind 1.0 30 > th dose independent rect. 6 23
997 226.36 wind 1.0 30 < th dose independent rect. 22 18