BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0765300 Os02g0765300|M81143
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424 147 1e-36
AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888 99 3e-22
AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414 94 2e-20
>AT4G25000.1 | chr4:12852109-12853825 REVERSE LENGTH=424
Length = 423
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 83/96 (86%)
Query: 22 AGQVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYD 81
+ +LFQ FNWESWK+ GG+YN L +DDIA AGITH+WLPPPSQSVA +GY+PG+LYD
Sbjct: 24 SSTLLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYD 83
Query: 82 LDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
L++SKYG+EA+LKSLI+A + KG++ +ADIVINHRT
Sbjct: 84 LNSSKYGSEAELKSLIKALNQKGIKALADIVINHRT 119
>AT1G69830.1 | chr1:26288518-26293003 REVERSE LENGTH=888
Length = 887
Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
++L QGFNWES K +G WY L K D++A+ G T +WLPPP++SV+ +GYMP LY+L+
Sbjct: 496 EILCQGFNWESNK-SGRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLN 554
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 117
S+YG +LK ++ FH G++V+ D V+NHR
Sbjct: 555 -SRYGTIDELKDTVKKFHKVGIKVLGDAVLNHRC 587
>AT1G76130.1 | chr1:28561647-28563914 FORWARD LENGTH=414
Length = 413
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 24 QVLFQGFNWESWKENGGWYNMLMGKVDDIAAAGITHVWLPPPSQSVAEQGYMPGRLYDLD 83
+V+ Q +NWES K + W+ L GKV DIA +G T WLPPPSQS+A +GY+P LY L+
Sbjct: 26 EVILQAYNWESHKYD--WWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSLN 83
Query: 84 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 116
S YG+E LKSL+ V+ +ADIVINHR
Sbjct: 84 -SAYGSEHLLKSLLRKMKQYKVRAMADIVINHR 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,381,005
Number of extensions: 83319
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)