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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0765600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0272) R2 : 0.0044
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0813 (0.0573) R2dN8 : 0.00568 R2N8 : 0.0044
σ : 0.512
deviance : 120.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.6 0.496 3.06 0.254 0.0566 2.33 -0.482 4.99 -0.0518 2.67 17.16 696 -- --
115.5 0.501 3.02 0.372 0.0309 0.322 -0.746 -- 0.00095 1.95 21.3 2557 -- --
112.22 0.493 3.06 0.265 0.063 2.71 -- 5.88 -0.0514 4.96 17 578 -- --
117.47 0.505 3.01 0.426 0.0742 0.281 -- -- 0.0101 4.26 21.94 4056 -- --
112.44 0.494 3.06 0.267 -- 2.88 -- 6.23 -0.0501 -- 16.91 560 -- --
116.75 0.507 3.03 0.237 0.00386 -- -0.692 -- -0.0564 1.49 -- -- -- --
118.49 0.51 3.02 0.259 0.0593 -- -- -- -0.0536 6.98 -- -- -- --
117.45 0.505 3.01 0.427 -- 0.312 -- -- 0.0157 -- 20.95 9487 -- --
120.14 0.51 3.02 -- 0.0717 0.132 -- -- -0.0631 6.81 21.5 1781 -- --
118.68 0.509 3.03 0.26 -- -- -- -- -0.0525 -- -- -- -- --
120.25 0.513 3.03 -- 0.0623 -- -- -- -0.0824 6.72 -- -- -- --
120.31 0.511 3.03 -- -- 0.0965 -- -- -0.0663 -- 22.98 1845 -- --
120.46 0.512 3.03 -- -- -- -- -- -0.0813 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.53 wind 3.0 90 < th dose dependent rect. 19 1
2 108.93 atmosphere 1005.0 90 < th dose independent rect. 11 1
7 109.23 atmosphere 1005.0 30 < th dose independent rect. 7 6
12 109.70 humidity 70.0 10 < th dose independent rect. 11 1
13 109.75 wind 1.0 720 < th dose dependent rect. 7 2
15 109.84 wind 1.0 720 < th dose independent rect. 7 2
35 110.31 atmosphere 1005.0 30 > th dose dependent rect. 2 1
40 110.33 temperature 20.0 30 > th dose dependent rect. 2 1
43 110.35 wind 3.0 90 < th dose independent rect. 19 1
44 110.35 temperature 20.0 30 > th dose independent rect. 2 1
54 110.38 temperature 25.0 30 < th dose independent rect. 2 1
57 110.39 wind 3.0 30 < th dose dependent rect. 2 1
62 110.41 wind 3.0 30 < th dose independent rect. 2 1
66 110.41 temperature 10.0 30 > th dose independent rect. 2 1
69 110.41 humidity 50.0 30 > th dose independent rect. 2 1
73 110.41 atmosphere 995.0 30 > th dose independent rect. 2 1
74 110.41 atmosphere 1005.0 30 > th dose independent rect. 2 1
75 110.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
77 110.41 radiation 1.0 30 < th dose independent rect. 2 1
82 110.41 precipitation 0.1 30 < th dose independent rect. 2 1
84 110.41 temperature 10.0 30 > th dose independent rect. 3 23
85 110.41 radiation 1.0 30 < th dose dependent rect. 2 1
90 110.41 precipitation 0.1 30 < th dose dependent rect. 2 1
92 110.42 humidity 50.0 30 > th dose dependent rect. 2 1
95 110.47 precipitation 0.1 14400 < th dose independent rect. 24 3
98 110.47 precipitation 0.1 14400 < th dose dependent rect. 24 3
107 110.57 atmosphere 1015.0 30 < th dose dependent rect. 2 1
108 110.58 temperature 20.0 1440 > th dose independent rect. 9 6
109 110.59 wind 1.0 270 < th dose independent rect. 16 1
110 110.59 wind 1.0 270 < th dose dependent rect. 16 1
111 110.61 precipitation 0.1 14400 > th dose independent rect. 24 3
115 110.62 wind 1.0 270 < th dose dependent rect. 16 3
118 110.63 temperature 30.0 30 < th dose dependent rect. 2 1
121 110.64 temperature 20.0 1440 > th dose independent rect. 8 10
125 110.67 temperature 20.0 1440 < th dose independent rect. 8 10
130 110.71 humidity 90.0 90 < th dose independent rect. 2 2
131 110.71 precipitation 0.1 10 < th dose independent rect. 3 23
132 110.71 precipitation 0.1 10 < th dose dependent rect. 3 23
136 110.74 temperature 20.0 1440 > th dose independent rect. 9 4
143 110.83 temperature 20.0 1440 < th dose independent rect. 9 4
145 110.85 precipitation 0.1 14400 > th dose dependent rect. 24 3
148 110.90 humidity 70.0 270 < th dose independent rect. 17 1
153 110.94 wind 1.0 30 > th dose independent rect. 2 1
168 111.06 humidity 70.0 270 < th dose dependent rect. 17 1
182 111.15 wind 9.0 30 < th dose independent rect. 3 23
198 111.22 wind 3.0 10 < th dose independent rect. 12 1
202 111.22 wind 3.0 10 < th dose dependent rect. 12 1
216 111.28 humidity 90.0 90 < th dose dependent rect. 2 2
226 111.32 temperature 20.0 1440 < th dose dependent rect. 12 2
229 111.33 temperature 20.0 1440 < th dose independent rect. 12 3
231 111.34 wind 9.0 4320 > th dose independent rect. 3 1
264 111.34 wind 9.0 4320 > th dose dependent rect. 3 1
333 111.40 humidity 90.0 14400 > th dose independent rect. 3 1
349 111.44 temperature 20.0 1440 > th dose independent rect. 13 5
379 111.52 wind 3.0 270 < th dose independent rect. 7 13
389 111.53 temperature 20.0 720 < th dose dependent rect. 7 1
390 111.53 humidity 90.0 14400 > th dose dependent rect. 3 1
391 111.54 atmosphere 1005.0 30 < th dose independent sin 1 NA
416 111.63 humidity 90.0 1440 > th dose independent rect. 12 1
427 111.65 humidity 90.0 1440 > th dose dependent rect. 12 1
429 111.66 temperature 20.0 1440 < th dose independent rect. 16 2
440 111.68 temperature 20.0 720 < th dose dependent rect. 7 5
460 111.78 wind 3.0 30 < th dose independent rect. 11 10
462 111.79 wind 1.0 270 < th dose independent rect. 16 3
466 111.81 temperature 20.0 1440 < th dose dependent rect. 8 12
477 111.84 temperature 20.0 720 < th dose independent rect. 7 2
512 111.91 wind 1.0 1440 > th dose independent rect. 6 3
534 111.99 temperature 20.0 1440 < th dose dependent rect. 17 1
542 112.01 atmosphere 1005.0 30 < th dose independent rect. 7 13
545 112.02 humidity 90.0 1440 < th dose independent rect. 12 1
547 112.02 temperature 20.0 1440 < th dose dependent rect. 19 1
572 112.07 wind 1.0 720 > th dose independent rect. 3 6
578 112.08 radiation 40.0 10 < th dose independent rect. 11 1
613 112.13 wind 9.0 720 < th dose dependent rect. 6 6
633 112.17 temperature 20.0 1440 < th dose dependent rect. 12 8
642 112.20 wind 5.0 30 < th dose independent rect. 19 18
643 112.20 wind 3.0 14400 > th dose dependent rect. 19 1
650 112.21 temperature 20.0 1440 < th dose dependent rect. 14 6
674 112.25 wind 9.0 4320 < th dose independent rect. 3 1
675 112.25 humidity 90.0 14400 < th dose independent rect. 3 2
685 112.26 humidity 50.0 720 > th dose independent rect. 3 12
689 112.27 atmosphere 1005.0 30 > th dose independent rect. 5 14
708 112.31 atmosphere 995.0 30 > th dose independent rect. 3 23
735 112.36 wind 1.0 14400 > th dose independent rect. 23 1
781 112.42 atmosphere 1005.0 90 > th dose independent rect. 5 12
782 112.42 radiation 40.0 30 < th dose independent rect. 19 18
784 112.42 wind 3.0 14400 > th dose dependent rect. 18 3
792 112.43 wind 1.0 720 > th dose dependent rect. 7 1
802 112.45 wind 1.0 14400 < th dose independent rect. 23 1
915 112.55 wind 9.0 14400 < th dose independent rect. 22 7
921 112.56 wind 9.0 14400 < th dose independent rect. 22 9
943 112.58 wind 1.0 720 < th dose independent rect. 1 8
948 112.58 wind 5.0 10 < th dose dependent rect. 11 10
950 112.58 temperature 20.0 1440 < th dose dependent rect. 7 17
951 112.59 wind 5.0 14400 < th dose independent rect. 19 1
984 112.62 wind 5.0 270 < th dose dependent rect. 7 13